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The map label for this gene is ftsY [H]

Identifier: 229587138

GI number: 229587138

Start: 1109396

End: 1110307

Strand: Direct

Name: ftsY [H]

Synonym: RAF_ORF1096

Alternate gene names: 229587138

Gene position: 1109396-1110307 (Clockwise)

Preceding gene: 229587137

Following gene: 229587139

Centisome position: 86.77

GC content: 34.87

Gene sequence:

>912_bases
ATGATTTCGATATTTAGTAAATTAAAACAAAGTTTATCTAAAACTTCTAATAAAATATCGGAAGGTATCGACAAAATATT
TTACAAGAAAAAATTAGATGCAGGAACTCTAGAAGCGCTAGAAGAGCTACTTATCTCAAGTGATATGAGTGTTTTGGTAG
TAACTAATATTATTGAAGAGTTTAAAAAGGTAAAATTTGACAAAGAAATAGATAGTGATACAGTAAAAGAAGCCCTTGCT
AAATTAATAGAGCAGCAGCTATCAAAATCAGCAATTCCTTTTACTTTAAGCGAAAATAAATTAAACGTAATTTTAGTTTG
CGGTGTTAACGGAGCAGGTAAAACCACGACTATAGGTAAGCTTGCTGCAATGTACTCGGCACAAGGGAAAAAAGTAGCAG
TTGCAGCCTGCGATACTTTTAGAGCAGCTGCCGTAAATCAGCTAAGTACTTGGGCAGATAGAGCAAATGCACTACTTATT
ACCGGTGAAGAATCAGCTGACCCCGCAAGTGTTGCTTATCGCGGGATGGAAGAATCGATAAAACAAAATATCAATATACT
TTTTATCGATACAGCAGGTAGGCTTCATAATAAGAAAAATTTGATGGATGAACTGTCTAAGATTGTAAAAGTTATAAAAA
AACTAGACGAGAATGCCCCCACTCATAGTATTTTAGTCATTGATGCTATTACCGGACAAAATACCTATAACCAAGTAGAA
CATTTTAATGATGCTACTAATTTGACGGGGCTTATCGTGACTAAACTAGACGGCAGTGCTAAAGCGGGCGTAATTGTCGG
AGTAGTACAAAAATTTAATTTACCCTTATACTTTATCGGTATAGGCGAGAAGATAGAGGACTTAAAAATATTCAACCAAC
ATGATTTTGCTAGAAATTTAGTGGGGTTGTGA

Upstream 100 bases:

>100_bases
GAGATTGCTTCGTCAATTACTTACGTAATTTCCTCGCAATGACGATTTGATATTCACGCAGACGTAACACCAACACCCAT
AAAACAAAAAACTATCTAAT

Downstream 100 bases:

>100_bases
GGTTTTGCTACGTCATTGCCCGCACGAATATTGAGTCGTCATTGCGAGTAGCCGTAGGCTGCACGGTAATCTCATGAAGT
AATAATAAACTCCTGAGATT

Product: Signal recognition particle-docking protein FtsY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEEFKKVKFDKEIDSDTVKEALA
KLIEQQLSKSAIPFTLSENKLNVILVCGVNGAGKTTTIGKLAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLI
TGEESADPASVAYRGMEESIKQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSILVIDAITGQNTYNQVE
HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNLVGL

Sequences:

>Translated_303_residues
MISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEEFKKVKFDKEIDSDTVKEALA
KLIEQQLSKSAIPFTLSENKLNVILVCGVNGAGKTTTIGKLAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLI
TGEESADPASVAYRGMEESIKQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSILVIDAITGQNTYNQVE
HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNLVGL
>Mature_303_residues
MISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEEFKKVKFDKEIDSDTVKEALA
KLIEQQLSKSAIPFTLSENKLNVILVCGVNGAGKTTTIGKLAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLI
TGEESADPASVAYRGMEESIKQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSILVIDAITGQNTYNQVE
HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNLVGL

Specific function: Functional homolog of SRP receptor. Probably involved in the reception and insertion of a subset of proteins at the membrane [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI226371618, Length=210, Percent_Identity=35.2380952380952, Blast_Score=134, Evalue=9e-32,
Organism=Homo sapiens, GI4507215, Length=210, Percent_Identity=35.2380952380952, Blast_Score=134, Evalue=9e-32,
Organism=Homo sapiens, GI23308697, Length=214, Percent_Identity=30.3738317757009, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI295424842, Length=214, Percent_Identity=30.3738317757009, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI89061728, Length=137, Percent_Identity=33.5766423357664, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1789874, Length=301, Percent_Identity=44.8504983388704, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1788963, Length=306, Percent_Identity=30.0653594771242, Blast_Score=144, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI17539958, Length=301, Percent_Identity=29.5681063122924, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI193206261, Length=208, Percent_Identity=32.2115384615385, Blast_Score=103, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6325345, Length=236, Percent_Identity=36.4406779661017, Blast_Score=151, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6320498, Length=216, Percent_Identity=31.4814814814815, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17647949, Length=270, Percent_Identity=30.3703703703704, Blast_Score=127, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24641198, Length=244, Percent_Identity=28.6885245901639, Blast_Score=99, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 33077; Mature: 33077

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
FKKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLSENKLNVILVCGVNGAGKTTTIGK
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEECCCCCCCCHHHHH
LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI
HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHH
KQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSILVIDAITGQNTYNQVE
HCCCCEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHH
HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNL
HHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHCHHHHHHHH
VGL
CCC
>Mature Secondary Structure
MISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
FKKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLSENKLNVILVCGVNGAGKTTTIGK
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEECCCCCCCCHHHHH
LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI
HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHH
KQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSILVIDAITGQNTYNQVE
HCCCCEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHH
HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNL
HHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHCHHHHHHHH
VGL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]