Click here to switch to the map view.

The map label for this gene is smpA

Identifier: 229587137

GI number: 229587137

Start: 1108719

End: 1109192

Strand: Direct

Name: smpA

Synonym: RAF_ORF1095

Alternate gene names: NA

Gene position: 1108719-1109192 (Clockwise)

Preceding gene: 229587134

Following gene: 229587138

Centisome position: 86.72

GC content: 29.96

Gene sequence:

>474_bases
ATGAAAATTTTTATAACATACATTTTTAGTATATTAGCCTTTTTTTCCTTAAGCGGCTGCAAAACTATCGAAAATAGAGG
GCAATCTATAGATGATTCGGCACTTGTAAAATTAGAGTCTAAAAAACTAAATAAAACAGAAGTCGTAGAGTTAATAGGTA
CGCCTACTATAGTACCGGAATATTCCCAAAATACCTGGTATTATGTTGAAAGAGTTATGTCTCAAAGAGCTTGGCTCAAT
CCAAAAATTGAAAAGCAGAAGATAGTAAAAATTACGTTTGATGCTAATAATTTTATGCAGGAAGTAGTAGTAATAGATGA
TTCTCATAGACAAGATATAGAAATAGTCCATGAATATACTAGGACATATGGAACGGAACTTAACGGACTACAAAAATTTG
TTAAAAATTTAGGTAGATTCAATAAAACCACTGACGGAAATAAAAACAAAAGCAAAAATAAGAAAAAGAGATAA

Upstream 100 bases:

>100_bases
GCCATTATTAGTCTCTCTAAATATAAATTAAAAAGTATTTGTCAAATTAGTGAAGCAGTATATTATAATCTTGTAATAAA
ATCTAGATAAAATTAAACTT

Downstream 100 bases:

>100_bases
GTACCTTAATCATCATTGCAAGATGGCTTATCTGTGTAGATACCTAATCGTCATTGCGAGCCATAGGCTGCGTGGCAATC
TCATGAAATAACAACAAACT

Product: tmRNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MKIFITYIFSILAFFSLSGCKTIENRGQSIDDSALVKLESKKLNKTEVVELIGTPTIVPEYSQNTWYYVERVMSQRAWLN
PKIEKQKIVKITFDANNFMQEVVVIDDSHRQDIEIVHEYTRTYGTELNGLQKFVKNLGRFNKTTDGNKNKSKNKKKR

Sequences:

>Translated_157_residues
MKIFITYIFSILAFFSLSGCKTIENRGQSIDDSALVKLESKKLNKTEVVELIGTPTIVPEYSQNTWYYVERVMSQRAWLN
PKIEKQKIVKITFDANNFMQEVVVIDDSHRQDIEIVHEYTRTYGTELNGLQKFVKNLGRFNKTTDGNKNKSKNKKKR
>Mature_157_residues
MKIFITYIFSILAFFSLSGCKTIENRGQSIDDSALVKLESKKLNKTEVVELIGTPTIVPEYSQNTWYYVERVMSQRAWLN
PKIEKQKIVKITFDANNFMQEVVVIDDSHRQDIEIVHEYTRTYGTELNGLQKFVKNLGRFNKTTDGNKNKSKNKKKR

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18303; Mature: 18303

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFITYIFSILAFFSLSGCKTIENRGQSIDDSALVKLESKKLNKTEVVELIGTPTIVPE
CEEHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEEECCCCCCHHHHHHHHCCCCCCCC
YSQNTWYYVERVMSQRAWLNPKIEKQKIVKITFDANNFMQEVVVIDDSHRQDIEIVHEYT
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHEECCCCCHHHHHHHHHH
RTYGTELNGLQKFVKNLGRFNKTTDGNKNKSKNKKKR
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKIFITYIFSILAFFSLSGCKTIENRGQSIDDSALVKLESKKLNKTEVVELIGTPTIVPE
CEEHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEEECCCCCCHHHHHHHHCCCCCCCC
YSQNTWYYVERVMSQRAWLNPKIEKQKIVKITFDANNFMQEVVVIDDSHRQDIEIVHEYT
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHEECCCCCHHHHHHHHHH
RTYGTELNGLQKFVKNLGRFNKTTDGNKNKSKNKKKR
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA