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The map label for this gene is 229587047

Identifier: 229587047

GI number: 229587047

Start: 989424

End: 990224

Strand: Direct

Name: 229587047

Synonym: RAF_ORF0959

Alternate gene names: NA

Gene position: 989424-990224 (Clockwise)

Preceding gene: 229587046

Following gene: 229587048

Centisome position: 77.39

GC content: 29.96

Gene sequence:

>801_bases
GTGATAAAATTAAAGTCAATATTATTCTTTAAAAATATTTTACGCTTAATCCTTACTATTTTCGTCGGTATATTGTGTTA
TGCTTATCTACTAGAACATAATTGGCGATATGTAACCTTAAGTGATGAACAAGTAAAAAAATACAGGATTAGTGAGAAAA
AAGCTATTGCCCTTTATCAGTTAATGAAAGACACTCATGAGCTACTTGGTAAAAATAATATTAATTATTGGATAGACGGC
GGCACTCTGCTTGGAGCCGTTAGACATCAAGGCATAATTCCTTTTGACGATGATTTAGATATCGGCATTATGCATGAAGA
CGAAATACGTTTGCAACAAATATTACCGCAATTTGAACAATTAGGATATCGTGTTAAACATAATAAAATTTATGTAATTT
GCGGAGAAAGATGCTTAGATATTTTCGTATTTCATAAAGAAAATGATAAATTTGTTCATTTTAATCAAAGTATGCGTAAT
AAATATCCAAATGATTTTTTTTATGATTATGAGCTATATCCTTTAAAAAAATATAAATTTGGTAGTATAGAAGTATATGG
GCCATCTGAATATAAAGAGAATTTGAATAGACAATATCTAGAATGGGATAAATATGCAATAATATACAGCCCTCATAGCT
TACACTTACCTTTTTTATCGAATATCGAGAAAAAAACTAAATTTATATTAACGCCGGAATTGTTAAAACCAGCTCAGCCA
CTCGGACCGCTAGAAGATAAAGTGAATATAGTCAATTCAGCTACATTTAGTGGTATGTGCGAGGATACAGCTTATCATTA
A

Upstream 100 bases:

>100_bases
TAAACTTTTAAACAAATTGAGATAAAAAAGTCATAACCGGTTGTTTTATATAGATTAAAAAATATTATATCAGCAGGGGA
AATGTAATTTAAGATTCAAG

Downstream 100 bases:

>100_bases
ATGTCGAATTGGTAATGACTATTTCGATATAAGCAACGAAATAGTCATATGATTTACATTTGCCTAGGTTACCTTTTTTG
CAAAAATTCATATCAAACAA

Product: LPS biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MIKLKSILFFKNILRLILTIFVGILCYAYLLEHNWRYVTLSDEQVKKYRISEKKAIALYQLMKDTHELLGKNNINYWIDG
GTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQLGYRVKHNKIYVICGERCLDIFVFHKENDKFVHFNQSMRN
KYPNDFFYDYELYPLKKYKFGSIEVYGPSEYKENLNRQYLEWDKYAIIYSPHSLHLPFLSNIEKKTKFILTPELLKPAQP
LGPLEDKVNIVNSATFSGMCEDTAYH

Sequences:

>Translated_266_residues
MIKLKSILFFKNILRLILTIFVGILCYAYLLEHNWRYVTLSDEQVKKYRISEKKAIALYQLMKDTHELLGKNNINYWIDG
GTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQLGYRVKHNKIYVICGERCLDIFVFHKENDKFVHFNQSMRN
KYPNDFFYDYELYPLKKYKFGSIEVYGPSEYKENLNRQYLEWDKYAIIYSPHSLHLPFLSNIEKKTKFILTPELLKPAQP
LGPLEDKVNIVNSATFSGMCEDTAYH
>Mature_266_residues
MIKLKSILFFKNILRLILTIFVGILCYAYLLEHNWRYVTLSDEQVKKYRISEKKAIALYQLMKDTHELLGKNNINYWIDG
GTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQLGYRVKHNKIYVICGERCLDIFVFHKENDKFVHFNQSMRN
KYPNDFFYDYELYPLKKYKFGSIEVYGPSEYKENLNRQYLEWDKYAIIYSPHSLHLPFLSNIEKKTKFILTPELLKPAQP
LGPLEDKVNIVNSATFSGMCEDTAYH

Specific function: Unknown

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RPE1 insert domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074
- InterPro:   IPR005728 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 31536; Mature: 31536

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLKSILFFKNILRLILTIFVGILCYAYLLEHNWRYVTLSDEQVKKYRISEKKAIALYQ
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCHHHHHHHH
LMKDTHELLGKNNINYWIDGGTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQ
HHHHHHHHHCCCCCEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
LGYRVKHNKIYVICGERCLDIFVFHKENDKFVHFNQSMRNKYPNDFFYDYELYPLKKYKF
CCEEEECCEEEEEECCCEEEEEEEEECCCCEEEECHHHHHCCCCCEEEEEEEEEECEECC
GSIEVYGPSEYKENLNRQYLEWDKYAIIYSPHSLHLPFLSNIEKKTKFILTPELLKPAQP
CEEEEECCHHHHHCCCHHHEECCCEEEEECCCEECCHHHHCHHHHHEEEECHHHHCCCCC
LGPLEDKVNIVNSATFSGMCEDTAYH
CCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKLKSILFFKNILRLILTIFVGILCYAYLLEHNWRYVTLSDEQVKKYRISEKKAIALYQ
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCHHHHHHHH
LMKDTHELLGKNNINYWIDGGTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQ
HHHHHHHHHCCCCCEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
LGYRVKHNKIYVICGERCLDIFVFHKENDKFVHFNQSMRNKYPNDFFYDYELYPLKKYKF
CCEEEECCEEEEEECCCEEEEEEEEECCCCEEEECHHHHHCCCCCEEEEEEEEEECEECC
GSIEVYGPSEYKENLNRQYLEWDKYAIIYSPHSLHLPFLSNIEKKTKFILTPELLKPAQP
CEEEEECCHHHHHCCCHHHEECCCEEEEECCCEECCHHHHCHHHHHEEEECHHHHCCCCC
LGPLEDKVNIVNSATFSGMCEDTAYH
CCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893; 11030655 [H]