Click here to switch to the map view.

The map label for this gene is 229587046

Identifier: 229587046

GI number: 229587046

Start: 988765

End: 989334

Strand: Direct

Name: 229587046

Synonym: RAF_ORF0958

Alternate gene names: NA

Gene position: 988765-989334 (Clockwise)

Preceding gene: 229587045

Following gene: 229587047

Centisome position: 77.34

GC content: 32.28

Gene sequence:

>570_bases
ATGAAAGACACTCATGAGCTACTTGGTAAGAATAATATTAATTATTGGATAGACGGCGGCACTCTGCTTGGAGCCGTTAG
ACATCAAGGCATAATTCCTTTTGACGATGATTTAGATATCGGCATTATGCATGAAGACGAAATACGTTTGCAACAAATAT
TACCGCAATTTGAGCAACTCGGTTATACTGTTTCCTATAAAAGAGCTTATAATATATGCAAAAAAGCTTGTTTAGATATT
TTCATTTTTCATAAAGAACAAAACAAATTTATATATACTAATTTAGCGGTTCGAAATAAGTATCCGAATAGTTCATTTTA
TGATAATGAATTATATCCTTTAAAAAAATATAAATTCGGTAGTATAGAGGTTTACGGTCCCACTGATCCTATAGGAAATC
TAAATAGGCAATATCCAGAATGGGATAAGTATGCAGTGATAGAGCAGCCCCATAGCTTACATTTACCTTTTTTATCGAAT
ATCGAGAAAAAAACTAAATTTATATTAACGCCGGAATTGTTAAAACCGGCTCAGCCTTTTAGTCCCTTAGAGGATAGAAT
AAACTTTTAA

Upstream 100 bases:

>100_bases
ATATATATTAGAACATGACTGGCGATATGTAACCTTAAGTGATGAACAAGTAAAAAAATACAGGATTAGCGAGAAAAAAG
CTATTGCCCTTTATCAGTTA

Downstream 100 bases:

>100_bases
ACAAATTGAGATAAAAAAGTCATAACCGGTTGTTTTATATAGATTAAAAAATATTATATCAGCAGGGGAAATGTAATTTA
AGATTCAAGGTGATAAAATT

Product: LPS biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKDTHELLGKNNINYWIDGGTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQLGYTVSYKRAYNICKKACLDI
FIFHKEQNKFIYTNLAVRNKYPNSSFYDNELYPLKKYKFGSIEVYGPTDPIGNLNRQYPEWDKYAVIEQPHSLHLPFLSN
IEKKTKFILTPELLKPAQPFSPLEDRINF

Sequences:

>Translated_189_residues
MKDTHELLGKNNINYWIDGGTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQLGYTVSYKRAYNICKKACLDI
FIFHKEQNKFIYTNLAVRNKYPNSSFYDNELYPLKKYKFGSIEVYGPTDPIGNLNRQYPEWDKYAVIEQPHSLHLPFLSN
IEKKTKFILTPELLKPAQPFSPLEDRINF
>Mature_189_residues
MKDTHELLGKNNINYWIDGGTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQLGYTVSYKRAYNICKKACLDI
FIFHKEQNKFIYTNLAVRNKYPNSSFYDNELYPLKKYKFGSIEVYGPTDPIGNLNRQYPEWDKYAVIEQPHSLHLPFLSN
IEKKTKFILTPELLKPAQPFSPLEDRINF

Specific function: Unknown

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 22187; Mature: 22187

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTHELLGKNNINYWIDGGTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQL
CCCHHHHHCCCCCEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHC
GYTVSYKRAYNICKKACLDIFIFHKEQNKFIYTNLAVRNKYPNSSFYDNELYPLKKYKFG
CCEEEHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
SIEVYGPTDPIGNLNRQYPEWDKYAVIEQPHSLHLPFLSNIEKKTKFILTPELLKPAQPF
CEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEECHHHHCHHHHHEEEECHHHHCCCCCC
SPLEDRINF
CCHHHHCCC
>Mature Secondary Structure
MKDTHELLGKNNINYWIDGGTLLGAVRHQGIIPFDDDLDIGIMHEDEIRLQQILPQFEQL
CCCHHHHHCCCCCEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHC
GYTVSYKRAYNICKKACLDIFIFHKEQNKFIYTNLAVRNKYPNSSFYDNELYPLKKYKFG
CCEEEHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
SIEVYGPTDPIGNLNRQYPEWDKYAVIEQPHSLHLPFLSNIEKKTKFILTPELLKPAQPF
CEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEECHHHHCHHHHHEEEECHHHHCCCCCC
SPLEDRINF
CCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]