Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 229586868

GI number: 229586868

Start: 773585

End: 774919

Strand: Direct

Name: radA [H]

Synonym: RAF_ORF0739

Alternate gene names: 229586868

Gene position: 773585-774919 (Clockwise)

Preceding gene: 229586867

Following gene: 229586869

Centisome position: 60.51

GC content: 37.38

Gene sequence:

>1335_bases
ATGACCAAAAAACATTACATATGTTCTAACTGTGGAAATATTAGTCCTAAATGGTCAGGGCAGTGCTTTGATTGCGGTGT
ATGGGGTAGTATTGTCGAAGAGATAATAAGTACAAATCAAGCAATTGTTAAAGTCGGTAGTAAGCAAGACTTCGATAAGC
TTTCAGGGCATGTAACCGAGCAGTTACGCATCCCTACCCCTATAGGTGAATTCAATAGAGTACTAGGCGGCGGTTTAGTG
CTTGGTTCTGCTATATTAATAGGAGGAGACCCTGGTATAGGCAAATCTACTTTGTTACTACAGCTAGCAGCAAGTAACTT
TGCATCAAAGATTAATTGCTTATATATAACAGGCGAAGAATCGTTAGACCAAATAAAATTAAGGGCCATAAGGCTAAACC
TAACTAACTATAATACCGATATTTTAGCAGCTACTAATTTGGAAGATATTATTGCGAGTATAGAAGCTAATAAAAATAAT
ATTGATTTAATAGTGATTGATTCTATTCAAACAATTACCACAAAAGAATTATCATCGCCTCCAGGCACTGTTTCGCAAAT
TCGTACATGTGCAAATGAGCTTGTTAATTATGCTAAGCAAAACAATATAATTATTTTATTAAGCTGTCACGTCACTAAAG
ACGGACAACTAGCAGGTCCTAAGATACTTGAACATTTAGTTGATACCGTGCTATATTTTGAGGGAGATCATAATAATCAT
TTCCGTATTTTACGCTCATATAAAAATCGTTTTGGCGGTGTGGGTGAAATAGGAGTATTTGAGATGAGCGGCAGCGGGCT
TATTGAAGTAACAAACCCGTCTGAACTATTTTTAATGCAGCGAGAACAGAACGTTATAGGTACGTCTATTTTTGCAGGAA
TCGAAGGTTCAAGACCGTTACTTATGGAAGTACAAGCCCTTATAGTACCCTCAAATATGGTAACTCCTAGACGCTCTGCG
GTGGGCTGGGATGCTAATAGATTATCAATGATACTTGCCGTACTTAGTAGTAGGATAGGACTGAATCTTGCTAATTATGA
GGTATATTTAAGCATTGCGGGGGGACTTAAAATTGCCGATCCTGCTTCTGATTTAGCAGTAACAGCGAGCTTAATATCTG
CTGCAACCGGCAACCCTGTACCCGAACATAGCGTCTTTTTCGGCGAAATCAGTTTATCGGGTGAAATAAGAAAAACCGCA
AAAGCAGAAACAAGAATAAAAGAAGCCGTAAAACTTGGATTTAATAAGATTATCTGCTCTAAATTTGAAAATTTAACGTA
TGACTTCATGTCTTCCGTCTCACATTTAAAGGACCTAAAAGAGATAATTAAATGA

Upstream 100 bases:

>100_bases
ATAGTATGTAATTTTGTACCTGTATTAAGGTTATTTTTTCTGGATTCCCGCTTTCGTGGGAATGACATAGAACCGCGTAA
CAAGACATTAAAAAACAAAC

Downstream 100 bases:

>100_bases
GTATAGTTTATGAAATAAGAAATTTGGAAGAAGCACGTAATTTTTTATCTAGTGTAGAAGAACAGCTGATATTAACAAAT
CATGCCTCTAGCGTAAAATA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MTKKHYICSNCGNISPKWSGQCFDCGVWGSIVEEIISTNQAIVKVGSKQDFDKLSGHVTEQLRIPTPIGEFNRVLGGGLV
LGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNN
IDLIVIDSIQTITTKELSSPPGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTVLYFEGDHNNH
FRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSRPLLMEVQALIVPSNMVTPRRSA
VGWDANRLSMILAVLSSRIGLNLANYEVYLSIAGGLKIADPASDLAVTASLISAATGNPVPEHSVFFGEISLSGEIRKTA
KAETRIKEAVKLGFNKIICSKFENLTYDFMSSVSHLKDLKEIIK

Sequences:

>Translated_444_residues
MTKKHYICSNCGNISPKWSGQCFDCGVWGSIVEEIISTNQAIVKVGSKQDFDKLSGHVTEQLRIPTPIGEFNRVLGGGLV
LGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNN
IDLIVIDSIQTITTKELSSPPGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTVLYFEGDHNNH
FRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSRPLLMEVQALIVPSNMVTPRRSA
VGWDANRLSMILAVLSSRIGLNLANYEVYLSIAGGLKIADPASDLAVTASLISAATGNPVPEHSVFFGEISLSGEIRKTA
KAETRIKEAVKLGFNKIICSKFENLTYDFMSSVSHLKDLKEIIK
>Mature_443_residues
TKKHYICSNCGNISPKWSGQCFDCGVWGSIVEEIISTNQAIVKVGSKQDFDKLSGHVTEQLRIPTPIGEFNRVLGGGLVL
GSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNI
DLIVIDSIQTITTKELSSPPGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTVLYFEGDHNNHF
RILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSRPLLMEVQALIVPSNMVTPRRSAV
GWDANRLSMILAVLSSRIGLNLANYEVYLSIAGGLKIADPASDLAVTASLISAATGNPVPEHSVFFGEISLSGEIRKTAK
AETRIKEAVKLGFNKIICSKFENLTYDFMSSVSHLKDLKEIIK

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=426, Percent_Identity=43.8967136150235, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 48182; Mature: 48051

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKHYICSNCGNISPKWSGQCFDCGVWGSIVEEIISTNQAIVKVGSKQDFDKLSGHVTE
CCCCCEEECCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHH
QLRIPTPIGEFNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEE
EEECCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
SLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTKELSSP
CHHHEEEEEEEEEEECCCCCEEEECCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCC
PGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTVLYFEGDHNNH
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECCCCCH
FRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSRPL
HHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEEECCCCHHHHHHEECCCCCCCH
LMEVQALIVPSNMVTPRRSAVGWDANRLSMILAVLSSRIGLNLANYEVYLSIAGGLKIAD
HEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECEEEEEEEECCEEECC
PASDLAVTASLISAATGNPVPEHSVFFGEISLSGEIRKTAKAETRIKEAVKLGFNKIICS
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
KFENLTYDFMSSVSHLKDLKEIIK
HHHCCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TKKHYICSNCGNISPKWSGQCFDCGVWGSIVEEIISTNQAIVKVGSKQDFDKLSGHVTE
CCCCEEECCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHH
QLRIPTPIGEFNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEE
EEECCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
SLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTKELSSP
CHHHEEEEEEEEEEECCCCCEEEECCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCC
PGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQLAGPKILEHLVDTVLYFEGDHNNH
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECCCCCH
FRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSRPL
HHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEEECCCCHHHHHHEECCCCCCCH
LMEVQALIVPSNMVTPRRSAVGWDANRLSMILAVLSSRIGLNLANYEVYLSIAGGLKIAD
HEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECEEEEEEEECCEEECC
PASDLAVTASLISAATGNPVPEHSVFFGEISLSGEIRKTAKAETRIKEAVKLGFNKIICS
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
KFENLTYDFMSSVSHLKDLKEIIK
HHHCCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA