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The map label for this gene is nlpD2 [H]

Identifier: 229586682

GI number: 229586682

Start: 550048

End: 551412

Strand: Direct

Name: nlpD2 [H]

Synonym: RAF_ORF0519

Alternate gene names: 229586682

Gene position: 550048-551412 (Clockwise)

Preceding gene: 229586676

Following gene: 229586683

Centisome position: 43.02

GC content: 31.65

Gene sequence:

>1365_bases
ATGAATGATACCGCACTATCTTATGATTTTAATGGCATATTACCATCATCTTTTATTAGTGCACGTCTCAGGAAAATCCT
CACCTCTGCCTCCTTATTATTATTTATAGGATTAGTTGTTTTTGTCTCTTTTGCTGTTAATAATTATGTTAACAACACTT
TATCCATAACTTTAGTACAACCTGATAGTAGTGAAGAAGAAACAATTTCATTTAAAGAAGTAGTAGTAAAAAAAGGCGAT
ACTATAAAGTCAATTTTGATAGAACAACATATCCCTAAAAATGAAATAGACAAAATTGTAAGTTTAATAAAGGAAGGAAA
ATTATCTTCTGCTCTTAAAATAGGGCAGCAAATTACTTTTGAATATGAAACAAAAATTATCGAAAACGAGGATGAAGATT
TAACCTCAGAGGTAGCATTCTTAAATAAAATCGTTATAATTATCGATAAGCTAAAAACTATTGAAGTAATTAGAGAAGGT
GATAATTTTAAAGTTGAAGAAATTGTAGTACCTTTAAGTAAAAAAGTTGCTAAATCGTCGGTAAGTATTGAGGCAAATTT
TATGTCAGCTCTTAAAAAATTGGGCTTATCGGATAACAGTATAATAGAGCTGATTAATGCTTATGCTTATCAAATCGATT
TTCAGCGTCAAATAAAACGCGGTGATACTGCAACCGTAATAACGGAAAAATACGTAACGGAAGATGGTAAATTTTCCCAC
CACGGTAAAATTCTATATGTTTCATTAAATCTTTCAGGGAAAGAATATAATATATATCGTTATTCTCATGATAATAACGC
AAATAATCATGCATTTTTTTCCGAAGACGGTAAAAGCGTAAAAAGAAGCTTACTTAAAACTCCGCTAAAAGTTATAAAAG
TTTCTTCACATTACGGTAATAGAAAGCATCCGATACTCGGTTATACTAAAATGCATAGGGGGGTTGACTTTGCAGCTCCA
ACCGGTACGCCTATATATTCCGCAGGAAACGGAGTTATAACAGAAATAGGTTGGAAGTCGGGTTATGGAAAATTTATTCA
GGTAAAACATAGCGGTACGCTATCTACTGCTTATGCGCATGCTTCAAATTTTGCAAAAAATTTAAAAGTGGGAAGTATCG
TAAAACAAGGACAAATCATCGCATATGTCGGAAGTACTGGCAGAGCTACAGCTCCACATTTACATTATGAAGTTAAAATT
GATGGCAAACATGTTAATCCTATGTCAGTTAAAACAACACCGGGTATAGAATTAAATGGAAAAAATTTAGAGAAATTTAA
ACAATTTAAAAAAGAAATAAAAACTTTAATTGTTAAGCTTGATAAGGAATTGCAAGCTGATAAAGCAGCCACAGTTTCAT
TGTAG

Upstream 100 bases:

>100_bases
AAACAAAATTTTACAATTTTTTATTGTAATTTGTTTGTATATAGTTCATATTATTACTAGTAATGAAAAATTGATTCAAA
TAATCTTCAGAGCAATTTTA

Downstream 100 bases:

>100_bases
AGTGAATCCTTGTCATACCGTAATCAACTTGGTGTTGTACGACTCTTATGTCATTCCCGCGAAAGCGGGAATCTAGTAAA
ACCTATAAAAAACTTGTTTT

Product: Membrane-bound metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MNDTALSYDFNGILPSSFISARLRKILTSASLLLFIGLVVFVSFAVNNYVNNTLSITLVQPDSSEEETISFKEVVVKKGD
TIKSILIEQHIPKNEIDKIVSLIKEGKLSSALKIGQQITFEYETKIIENEDEDLTSEVAFLNKIVIIIDKLKTIEVIREG
DNFKVEEIVVPLSKKVAKSSVSIEANFMSALKKLGLSDNSIIELINAYAYQIDFQRQIKRGDTATVITEKYVTEDGKFSH
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKVIKVSSHYGNRKHPILGYTKMHRGVDFAAP
TGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAHASNFAKNLKVGSIVKQGQIIAYVGSTGRATAPHLHYEVKI
DGKHVNPMSVKTTPGIELNGKNLEKFKQFKKEIKTLIVKLDKELQADKAATVSL

Sequences:

>Translated_454_residues
MNDTALSYDFNGILPSSFISARLRKILTSASLLLFIGLVVFVSFAVNNYVNNTLSITLVQPDSSEEETISFKEVVVKKGD
TIKSILIEQHIPKNEIDKIVSLIKEGKLSSALKIGQQITFEYETKIIENEDEDLTSEVAFLNKIVIIIDKLKTIEVIREG
DNFKVEEIVVPLSKKVAKSSVSIEANFMSALKKLGLSDNSIIELINAYAYQIDFQRQIKRGDTATVITEKYVTEDGKFSH
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKVIKVSSHYGNRKHPILGYTKMHRGVDFAAP
TGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAHASNFAKNLKVGSIVKQGQIIAYVGSTGRATAPHLHYEVKI
DGKHVNPMSVKTTPGIELNGKNLEKFKQFKKEIKTLIVKLDKELQADKAATVSL
>Mature_454_residues
MNDTALSYDFNGILPSSFISARLRKILTSASLLLFIGLVVFVSFAVNNYVNNTLSITLVQPDSSEEETISFKEVVVKKGD
TIKSILIEQHIPKNEIDKIVSLIKEGKLSSALKIGQQITFEYETKIIENEDEDLTSEVAFLNKIVIIIDKLKTIEVIREG
DNFKVEEIVVPLSKKVAKSSVSIEANFMSALKKLGLSDNSIIELINAYAYQIDFQRQIKRGDTATVITEKYVTEDGKFSH
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKVIKVSSHYGNRKHPILGYTKMHRGVDFAAP
TGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAHASNFAKNLKVGSIVKQGQIIAYVGSTGRATAPHLHYEVKI
DGKHVNPMSVKTTPGIELNGKNLEKFKQFKKEIKTLIVKLDKELQADKAATVSL

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=366, Percent_Identity=31.1475409836066, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI87082174, Length=98, Percent_Identity=40.8163265306122, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 50406; Mature: 50406

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTALSYDFNGILPSSFISARLRKILTSASLLLFIGLVVFVSFAVNNYVNNTLSITLVQ
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
PDSSEEETISFKEVVVKKGDTIKSILIEQHIPKNEIDKIVSLIKEGKLSSALKIGQQITF
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEE
EYETKIIENEDEDLTSEVAFLNKIVIIIDKLKTIEVIREGDNFKVEEIVVPLSKKVAKSS
EEEEEEECCCCHHHHHHHHHHHHHHHEEHHHHHEEHHCCCCCEEEHHEEECHHHHHHHHH
VSIEANFMSALKKLGLSDNSIIELINAYAYQIDFQRQIKRGDTATVITEKYVTEDGKFSH
CEEEHHHHHHHHHCCCCCHHHHHHHHHHHHEEEHHHHHCCCCCEEEEEHHHCCCCCCCCC
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKVIKVSSHYGN
CCEEEEEEEECCCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHCCHHEEEEECCCCC
RKHPILGYTKMHRGVDFAAPTGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAH
CCCCEECHHHHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCCCHHHHHH
ASNFAKNLKVGSIVKQGQIIAYVGSTGRATAPHLHYEVKIDGKHVNPMSVKTTPGIELNG
HHHHHHCCCHHHEECCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCEEECC
KNLEKFKQFKKEIKTLIVKLDKELQADKAATVSL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNDTALSYDFNGILPSSFISARLRKILTSASLLLFIGLVVFVSFAVNNYVNNTLSITLVQ
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
PDSSEEETISFKEVVVKKGDTIKSILIEQHIPKNEIDKIVSLIKEGKLSSALKIGQQITF
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEE
EYETKIIENEDEDLTSEVAFLNKIVIIIDKLKTIEVIREGDNFKVEEIVVPLSKKVAKSS
EEEEEEECCCCHHHHHHHHHHHHHHHEEHHHHHEEHHCCCCCEEEHHEEECHHHHHHHHH
VSIEANFMSALKKLGLSDNSIIELINAYAYQIDFQRQIKRGDTATVITEKYVTEDGKFSH
CEEEHHHHHHHHHCCCCCHHHHHHHHHHHHEEEHHHHHCCCCCEEEEEHHHCCCCCCCCC
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKVIKVSSHYGN
CCEEEEEEEECCCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHCCHHEEEEECCCCC
RKHPILGYTKMHRGVDFAAPTGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAH
CCCCEECHHHHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCCCHHHHHH
ASNFAKNLKVGSIVKQGQIIAYVGSTGRATAPHLHYEVKIDGKHVNPMSVKTTPGIELNG
HHHHHHCCCHHHEECCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCEEECC
KNLEKFKQFKKEIKTLIVKLDKELQADKAATVSL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]