BacMap

Definition	Rickettsia africae ESF-5 chromosome, complete genome.
Accession	NC_012633
Length	1,278,540

Click here to switch to the map view.

The map label for this gene is cbiO1 [H]

Identifier: 229586635

GI number: 229586635

Start: 494711

End: 495433

Strand: Direct

Name: cbiO1 [H]

Synonym: RAF_ORF0467

Alternate gene names: 229586635

Gene position: 494711-495433 (Clockwise)

Preceding gene: 229586634

Following gene: 229586638

Centisome position: 38.69

GC content: 34.72

Gene sequence:

>723_bases
ATGAAACCTTATTTATATGCAGAAAATATACAGTTCAAAGTTAAAGAAAGAACCGAACCTATAATTGCTGAAACTACTTT
AAATATTACTAAAGAAGAGTTTGTTGTAATATTGGGTCATAACGGTAGCGGTAAGTCTACTTTAGCTAAAATACTTGCCG
GCTATTTAAAACCTACTAGCGGGAAAGTGTTTCTAGATCAAGTCAGAATCGATAAAATACCTAAAGGACAAAAAGCTTCT
ACATTAGTTACATTAACACAAAAAGCTGAAGAGAGGCTATTTACCGAGCTAACCCTTGAAGAAAATGTCATTTTGTGGGA
AAGTAGATTCTCTAGTAATGAACGGTTAGCAAGTAGCGAGTTGTTAGAGCTTACAGGTGCGCCTAAACGCTTTTTGCCTT
TACTTTCACAGCCATTAGGTAAATTTTCCGGTGGAGAAAAACAGATGATACTGCTGGCACTTATCATAGCTCATCCACCT
AAAATATTATTTCTAGACGAACATACGGCAAATTTAGATCCGAAAGCTTCTTTGGAAGTGATGAAAAAAACAGCAGAGAT
TATAGAGAAACATAAGATTACTTCTGTTATGATCACGCATAATTTAGAAGATGCCGTAAATTACGGCAAAAGGCTTATAG
TCTTAGATAGTGGTAAGGTAGTACTAGACTACCTAAAACCACCGGGTTTTTCTTTAAAAGAACTTAAAGAGATTTTAAAT
TAG

Upstream 100 bases:

>100_bases
TGGGCTTTTTACTCCGAATTGGAATCGATCCCATAAATCTTAAGCTTATTTTAGGTATAGTATTGTTTATTTCGTTGAGT
TCTGTAAAAAGAGAGGCTTT

Downstream 100 bases:

>100_bases
AATTGAATATCTGCACCTATCTGTCCGGCTAATTCAGTATCGAAAGAATATTCACAGATATAATCTATTAACTCACTTTT
TACATTCTCGTTAGTAGTCT

Product: ABC transporter ATP-binding protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKPYLYAENIQFKVKERTEPIIAETTLNITKEEFVVILGHNGSGKSTLAKILAGYLKPTSGKVFLDQVRIDKIPKGQKAS
TLVTLTQKAEERLFTELTLEENVILWESRFSSNERLASSELLELTGAPKRFLPLLSQPLGKFSGGEKQMILLALIIAHPP
KILFLDEHTANLDPKASLEVMKKTAEIIEKHKITSVMITHNLEDAVNYGKRLIVLDSGKVVLDYLKPPGFSLKELKEILN

Sequences:

>Translated_240_residues
MKPYLYAENIQFKVKERTEPIIAETTLNITKEEFVVILGHNGSGKSTLAKILAGYLKPTSGKVFLDQVRIDKIPKGQKAS
TLVTLTQKAEERLFTELTLEENVILWESRFSSNERLASSELLELTGAPKRFLPLLSQPLGKFSGGEKQMILLALIIAHPP
KILFLDEHTANLDPKASLEVMKKTAEIIEKHKITSVMITHNLEDAVNYGKRLIVLDSGKVVLDYLKPPGFSLKELKEILN
>Mature_240_residues
MKPYLYAENIQFKVKERTEPIIAETTLNITKEEFVVILGHNGSGKSTLAKILAGYLKPTSGKVFLDQVRIDKIPKGQKAS
TLVTLTQKAEERLFTELTLEENVILWESRFSSNERLASSELLELTGAPKRFLPLLSQPLGKFSGGEKQMILLALIIAHPP
KILFLDEHTANLDPKASLEVMKKTAEIIEKHKITSVMITHNLEDAVNYGKRLIVLDSGKVVLDYLKPPGFSLKELKEILN

Specific function: Part of the ABC transporter complex CbiONQ involved in cobalt import. Responsible for energy coupling to the transport system [H]

COG id: COG1101

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27262624, Length=198, Percent_Identity=26.2626262626263, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI27262626, Length=198, Percent_Identity=26.2626262626263, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI9665248, Length=219, Percent_Identity=22.8310502283105, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI42490749, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI171184400, Length=221, Percent_Identity=28.0542986425339, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI21536376, Length=202, Percent_Identity=26.2376237623762, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI89111135, Length=227, Percent_Identity=27.7533039647577, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI42741659, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI105990541, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=26.7676767676768, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI9955963, Length=213, Percent_Identity=23.4741784037559, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI9961250, Length=222, Percent_Identity=25.6756756756757, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI47078218, Length=211, Percent_Identity=29.8578199052133, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI45446740, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI116734710, Length=223, Percent_Identity=25.1121076233184, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI4505771, Length=216, Percent_Identity=25.462962962963, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI9961252, Length=216, Percent_Identity=25.462962962963, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=29, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1786253, Length=198, Percent_Identity=28.2828282828283, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1786345, Length=221, Percent_Identity=27.1493212669683, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=26.3414634146341, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=31.4655172413793, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789864, Length=211, Percent_Identity=27.0142180094787, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=211, Percent_Identity=27.9620853080569, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=27.0531400966184, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787164, Length=218, Percent_Identity=29.3577981651376, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786803, Length=203, Percent_Identity=28.0788177339901, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1790467, Length=203, Percent_Identity=26.1083743842365, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787370, Length=211, Percent_Identity=27.4881516587678, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787112, Length=219, Percent_Identity=28.7671232876712, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI87082268, Length=202, Percent_Identity=29.2079207920792, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1790739, Length=226, Percent_Identity=29.2035398230088, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786654, Length=219, Percent_Identity=28.310502283105, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081782, Length=193, Percent_Identity=29.5336787564767, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787758, Length=198, Percent_Identity=29.2929292929293, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787089, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=26.9406392694064, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790544, Length=217, Percent_Identity=26.7281105990783, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=24.8868778280543, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1788897, Length=223, Percent_Identity=25.5605381165919, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787548, Length=233, Percent_Identity=24.4635193133047, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788225, Length=212, Percent_Identity=28.3018867924528, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788450, Length=206, Percent_Identity=25.7281553398058, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=25.1207729468599, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786872, Length=203, Percent_Identity=29.5566502463054, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87081834, Length=226, Percent_Identity=24.7787610619469, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=24.0196078431373, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=26.2008733624454, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=27.2277227722772, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=27.0531400966184, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787547, Length=217, Percent_Identity=25.3456221198157, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789751, Length=199, Percent_Identity=29.6482412060301, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787041, Length=216, Percent_Identity=26.8518518518519, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1789672, Length=207, Percent_Identity=25.1207729468599, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1788540, Length=219, Percent_Identity=26.4840182648402, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=220, Percent_Identity=26.3636363636364, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=221, Percent_Identity=27.1493212669683, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=220, Percent_Identity=24.0909090909091, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=211, Percent_Identity=26.5402843601896, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=226, Percent_Identity=23.8938053097345, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=222, Percent_Identity=30.6306306306306, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=222, Percent_Identity=29.7297297297297, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=217, Percent_Identity=23.963133640553, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17511077, Length=206, Percent_Identity=24.7572815533981, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=214, Percent_Identity=27.5700934579439, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=209, Percent_Identity=25.8373205741627, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=227, Percent_Identity=25.9911894273128, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=219, Percent_Identity=27.8538812785388, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193209740, Length=236, Percent_Identity=28.3898305084746, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=193, Percent_Identity=27.979274611399, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=196, Percent_Identity=25.5102040816327, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=196, Percent_Identity=25.5102040816327, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=196, Percent_Identity=25.5102040816327, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=222, Percent_Identity=27.4774774774775, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=195, Percent_Identity=29.2307692307692, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=238, Percent_Identity=27.7310924369748, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=246, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641565, Length=220, Percent_Identity=25.4545454545455, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281363262, Length=224, Percent_Identity=32.1428571428571, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24653245, Length=224, Percent_Identity=32.1428571428571, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221474134, Length=224, Percent_Identity=29.0178571428571, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24666092, Length=206, Percent_Identity=25.2427184466019, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI17136662, Length=219, Percent_Identity=26.027397260274, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643674, Length=208, Percent_Identity=23.0769230769231, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649703, Length=213, Percent_Identity=28.169014084507, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28573571, Length=206, Percent_Identity=24.2718446601942, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI28573573, Length=206, Percent_Identity=24.2718446601942, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015856
- InterPro:   IPR003593
- InterPro:   IPR022112 [H]

Pfam domain/function: PF00005 ABC_tran; PF12370 CoABC_C [H]

EC number: NA

Molecular weight: Translated: 26891; Mature: 26891

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYLYAENIQFKVKERTEPIIAETTLNITKEEFVVILGHNGSGKSTLAKILAGYLKPTS
CCCCEEECCCEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
GKVFLDQVRIDKIPKGQKASTLVTLTQKAEERLFTELTLEENVILWESRFSSNERLASSE
CCEEEEEEECCCCCCCCCCHHEEEHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHH
LLELTGAPKRFLPLLSQPLGKFSGGEKQMILLALIIAHPPKILFLDEHTANLDPKASLEV
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH
MKKTAEIIEKHKITSVMITHNLEDAVNYGKRLIVLDSGKVVLDYLKPPGFSLKELKEILN
HHHHHHHHHHHHHEEEEEECCHHHHHCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHC
>Mature Secondary Structure
MKPYLYAENIQFKVKERTEPIIAETTLNITKEEFVVILGHNGSGKSTLAKILAGYLKPTS
CCCCEEECCCEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
GKVFLDQVRIDKIPKGQKASTLVTLTQKAEERLFTELTLEENVILWESRFSSNERLASSE
CCEEEEEEECCCCCCCCCCHHEEEHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHH
LLELTGAPKRFLPLLSQPLGKFSGGEKQMILLALIIAHPPKILFLDEHTANLDPKASLEV
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH
MKKTAEIIEKHKITSVMITHNLEDAVNYGKRLIVLDSGKVVLDYLKPPGFSLKELKEILN
HHHHHHHHHHHHHEEEEEECCHHHHHCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]