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The map label for this gene is tolR [H]

Identifier: 229586572

GI number: 229586572

Start: 420150

End: 420581

Strand: Direct

Name: tolR [H]

Synonym: RAF_ORF0393

Alternate gene names: 229586572

Gene position: 420150-420581 (Clockwise)

Preceding gene: 229586571

Following gene: 229586573

Centisome position: 32.86

GC content: 36.34

Gene sequence:

>432_bases
ATGGCTATAAAGCTTGCCGGAAGTAATAGAAAAAGTAAAAGAGCGGTAGTTAGTGAAATTAACGTTACGCCGCTTGTTGA
CGTGATGCTTGTGCTATTAATTATTTTTATGATTACTTCTCCAATGCTTGTGTCAGGAGTAAACGTGGATTTGCCTGAGA
CAAATTCAAGCCCGATTTCAGGTCAGGATGAGCCTTTGGTTGTTACGATCAATAATAAAGGCAAAATTTTCTTACTTGAA
ATTCCAATAGAAAGAATGCATTTAACCGACAAGCTTGCAAGTATCACTAAAGAAAAAAAGGATGCTAGAATTTTTGTAAG
AGGCGATAGGAATGTTTCTTATGGGCAGGTAGTGGAGATAGTTGCCGAAATTCATGCTGCCGGCTTTTCTCGTGTAGCTC
TTATTTCAAATATTAAAAATAATGAAAAGTAA

Upstream 100 bases:

>100_bases
ATCTGATTTCCCGTATTACTCTTATCAATAATAAGATTGAAGATTTTATTAGTGAGTTAAACTCTATACTTTCTAAGGCA
ATTGATCAGGAGAAAATGTA

Downstream 100 bases:

>100_bases
TCAAAATAAGGATAATTTTACGGTTTCCCTTAGCTTCTCTATTGTTCTGCACTTACTTCTTTTATATTTTTTTCTATTCG
GTATGCCGTCACTTTTTGAA

Product: TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAIKLAGSNRKSKRAVVSEINVTPLVDVMLVLLIIFMITSPMLVSGVNVDLPETNSSPISGQDEPLVVTINNKGKIFLLE
IPIERMHLTDKLASITKEKKDARIFVRGDRNVSYGQVVEIVAEIHAAGFSRVALISNIKNNEK

Sequences:

>Translated_143_residues
MAIKLAGSNRKSKRAVVSEINVTPLVDVMLVLLIIFMITSPMLVSGVNVDLPETNSSPISGQDEPLVVTINNKGKIFLLE
IPIERMHLTDKLASITKEKKDARIFVRGDRNVSYGQVVEIVAEIHAAGFSRVALISNIKNNEK
>Mature_142_residues
AIKLAGSNRKSKRAVVSEINVTPLVDVMLVLLIIFMITSPMLVSGVNVDLPETNSSPISGQDEPLVVTINNKGKIFLLEI
PIERMHLTDKLASITKEKKDARIFVRGDRNVSYGQVVEIVAEIHAAGFSRVALISNIKNNEK

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=120, Percent_Identity=34.1666666666667, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014168
- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15694; Mature: 15563

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKLAGSNRKSKRAVVSEINVTPLVDVMLVLLIIFMITSPMLVSGVNVDLPETNSSPIS
CEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
GQDEPLVVTINNKGKIFLLEIPIERMHLTDKLASITKEKKDARIFVRGDRNVSYGQVVEI
CCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
VAEIHAAGFSRVALISNIKNNEK
HHHHHHCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
AIKLAGSNRKSKRAVVSEINVTPLVDVMLVLLIIFMITSPMLVSGVNVDLPETNSSPIS
EEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
GQDEPLVVTINNKGKIFLLEIPIERMHLTDKLASITKEKKDARIFVRGDRNVSYGQVVEI
CCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
VAEIHAAGFSRVALISNIKNNEK
HHHHHHCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8955385; 10984043 [H]