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The map label for this gene is virD4 [H]

Identifier: 229586544

GI number: 229586544

Start: 392393

End: 394168

Strand: Direct

Name: virD4 [H]

Synonym: RAF_ORF0365

Alternate gene names: 229586544

Gene position: 392393-394168 (Clockwise)

Preceding gene: 229586543

Following gene: 229586545

Centisome position: 30.69

GC content: 35.92

Gene sequence:

>1776_bases
ATGGAATGGCATAAGATACTTAAAGTTACTAGAAATATATTCGGTCATGCTATAATTCATCCGGTTGTTATTTTTTGTAC
CATTTGGATAAGCGGTGCATTTGTTGCAATTTTTACTAATGAGGTTGGAGCTTTAGGTGTAAATATAAATGCTATAAATA
TTGCTTATAAGTGGGCTTATTGGCTTATTAACGTTTGGGGGCAGTTAAAAATTACCGACTATAATTATTTAAAATTGAAG
CTACTTGCCTCTCTTCTCAGTCCGGTTATTATTGTTATAATATTTTACATTAAAAATTTTGAAAGAATAAAATCATTACA
ATTTTTCAAACAAGATGAAAAAGTATATGGAGATGCAAGCTGGGCTAATCCGTCAGATATAGAGGCTGCAGGTCTTAGAT
CTAAGAAAGGTATGCTGATCGGTGTTGATGCCGGTGGATATTTTGTTGCAGACGGGTTCCAGCATGCTTTATTATTTGCT
CCTACCGGTTCAGGTAAAGGTGTAGGGTTTGTGATACCTAATTTGTTATTTTGGAGTGATTCGGTAGTAGTGCATGACAT
AAAGCTTGAAAATCACGGGTTGACAAGTGGTTGGCGTGAGAAGCAAGGGCAGAAAGTTTTTGTATGGGAGCCTTCTAATC
CTGATGGTGTTACTCATTGTTATAATCCGATTGATTGGGTTAGTACTAAGCCTGGGCAAATGGTTGATGACGTTCAAAAA
ATTTCAAATCTTATAATGCCGGAAAAGGATTTTTGGAATAATGAGGCACGAAGCTTATTTTTAGGTGTAACTCTATATTT
AATAGCCGATCCTACTAAAACTAAATCTTTCGGTGAAGTAGTGCGTACTATGAGGAGTGACGACGTAGTTTATAATCTAG
CGGTCGTACTCGATACGCTTGGTGGTGTAATACATCCTGTTGCATATATGAATATTGCTGCATTTTTGCAAAAAGCCGAT
AAAGAGCGTTCCGGCGTAATATCTACAATGAACTCATCGCTTGAATTATGGGCAAATCCACTGATTGATTCAGCTACAGC
ATCTTCTGATTTCAATATACAAGAATTTAAAAAAGTCAAAACAACCGTATATGTAGGGTTAACACCCGATAATATACAGC
GTTTACAAAAATTAATGCAGGTGTTTTATCAGCAGGCGACAGAATTTTTAAGCCGCAAAATGCCGGATTTAAAGGAAGAG
CCGTATGGAGTAATGTTCTTACTTGACGAGTTCCCGACGCTCGGGAAGATGGATACTTTTAAAGCCGGTATAGCTTATTT
TAGAGGTTATAGAGTTCGTTTATTTTTAATTATCCAAGATACACAGCAGTTAAAAGGAACATACGAAGATGCAGGGATGA
ATTCTTTCTTATCTAATGCAACATATCGTATTACTTTTGCCGCTAATAACTATGAAACGGCAAATTTAATATCGCAGCTT
GTCGGTAATAAGACGGTAGAACAAAGATCATTTAGTAAACCTTTATTTTTTGATCTTAATATTGCTACTAGAACCCAAAA
CGTTTCTCAGGTTCAAAGAGCTTTACTTTTACCTCAAGAAGTAATACAGTTACCGAGAGATGAGCAAATTGTTTTAATAG
AATCCTTTCCGCCTATAAAATCGCGTAAAATTAAGTATTATGAAGATAAGTTTTTTACTAGTAGATTATTACCGCCGACT
TTTGTACCTACTCAAGTACCTTTTGACCCTAGGGCAAATAATAATGGGGCTTCGGAAGAGACCGAAACAATAACTGTTCC
GGAAAATAATGAGTAA

Upstream 100 bases:

>100_bases
CAATCCTGAGATTGCCACGCTCTTTTTAGTTGCGCGCAATGACGTAAAAATTACTCCACGCAAAAACTAATATATAAGCA
TAAACTAGGAATATCAATTC

Downstream 100 bases:

>100_bases
AATGCGTTCAGCTATTATTGATATCGGTTCAAATGCTTTAAGAGCTGTAGTTTATGAAAGTGATGAGCTTGGAGCGCCGG
AAATTTTTAATTATAAATTT

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 591

Protein sequence:

>591_residues
MEWHKILKVTRNIFGHAIIHPVVIFCTIWISGAFVAIFTNEVGALGVNINAINIAYKWAYWLINVWGQLKITDYNYLKLK
LLASLLSPVIIVIIFYIKNFERIKSLQFFKQDEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFA
PTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGVTHCYNPIDWVSTKPGQMVDDVQK
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPDLKEE
PYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
VGNKTVEQRSFSKPLFFDLNIATRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPT
FVPTQVPFDPRANNNGASEETETITVPENNE

Sequences:

>Translated_591_residues
MEWHKILKVTRNIFGHAIIHPVVIFCTIWISGAFVAIFTNEVGALGVNINAINIAYKWAYWLINVWGQLKITDYNYLKLK
LLASLLSPVIIVIIFYIKNFERIKSLQFFKQDEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFA
PTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGVTHCYNPIDWVSTKPGQMVDDVQK
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPDLKEE
PYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
VGNKTVEQRSFSKPLFFDLNIATRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPT
FVPTQVPFDPRANNNGASEETETITVPENNE
>Mature_591_residues
MEWHKILKVTRNIFGHAIIHPVVIFCTIWISGAFVAIFTNEVGALGVNINAINIAYKWAYWLINVWGQLKITDYNYLKLK
LLASLLSPVIIVIIFYIKNFERIKSLQFFKQDEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFA
PTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGVTHCYNPIDWVSTKPGQMVDDVQK
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPDLKEE
PYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
VGNKTVEQRSFSKPLFFDLNIATRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPT
FVPTQVPFDPRANNNGASEETETITVPENNE

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 66898; Mature: 66898

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWHKILKVTRNIFGHAIIHPVVIFCTIWISGAFVAIFTNEVGALGVNINAINIAYKWAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEEEEEEEHHHHH
WLINVWGQLKITDYNYLKLKLLASLLSPVIIVIIFYIKNFERIKSLQFFKQDEKVYGDAS
HHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHCCCCC
WANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFAPTGSGKGVGFVIPNLLFWSD
CCCCCCCCHHCCCCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCEEEEECCCHHEECC
SVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGVTHCYNPIDWVSTKPGQMVDDVQK
CEEEEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTL
HHHHCCCCHHCCCCHHHEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
GGVIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCHHHCCCCCCCCCCHHHHHHEE
TTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPDLKEEPYGVMFLLDEFPTLGKMDTF
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHH
KAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
HHHHHHHCCCEEEEEEEEECCHHHCCCHHHCCHHHHHCCCEEEEEEEECCCCHHHHHHHH
VGNKTVEQRSFSKPLFFDLNIATRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIK
HCCCCHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCC
SRKIKYYEDKFFTSRLLPPTFVPTQVPFDPRANNNGASEETETITVPENNE
CCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MEWHKILKVTRNIFGHAIIHPVVIFCTIWISGAFVAIFTNEVGALGVNINAINIAYKWAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEEEEEEEHHHHH
WLINVWGQLKITDYNYLKLKLLASLLSPVIIVIIFYIKNFERIKSLQFFKQDEKVYGDAS
HHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHCCCCC
WANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFAPTGSGKGVGFVIPNLLFWSD
CCCCCCCCHHCCCCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCEEEEECCCHHEECC
SVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGVTHCYNPIDWVSTKPGQMVDDVQK
CEEEEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTL
HHHHCCCCHHCCCCHHHEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
GGVIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCHHHCCCCCCCCCCHHHHHHEE
TTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPDLKEEPYGVMFLLDEFPTLGKMDTF
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHH
KAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
HHHHHHHCCCEEEEEEEEECCHHHCCCHHHCCHHHHHCCCEEEEEEEECCCCHHHHHHHH
VGNKTVEQRSFSKPLFFDLNIATRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIK
HCCCCHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCC
SRKIKYYEDKFFTSRLLPPTFVPTQVPFDPRANNNGASEETETITVPENNE
CCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3658701; 2822660 [H]