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The map label for this gene is ctp [H]

Identifier: 229586476

GI number: 229586476

Start: 315610

End: 316980

Strand: Direct

Name: ctp [H]

Synonym: RAF_ORF0288

Alternate gene names: 229586476

Gene position: 315610-316980 (Clockwise)

Preceding gene: 229586475

Following gene: 229586477

Centisome position: 24.69

GC content: 33.48

Gene sequence:

>1371_bases
ATGTTATTACGTTTAATTATAACACTATTTTTTATTATAAATTCTATTTGTGCATTTGCAGAAGGAGAAAAAGAAACTGA
AAATAAAATATCAAATCAGGAAGCTTATAAGCAATTTCAAGACGTATTTGAACGTATCGAAAAGGCTTATGTACAGGTAC
CCGATAGGCAAAAAATGATAGATGAAGCAATTAACGGTATGTTAAACTCACTTGATCCCCATTCAAGCTATTATACCGAT
GAGGATTTAGAAGATATTTTGACTTTTACAAAAGGTGAATTCGGCGGAATCGGTGTTGAAATAATGTATGATAGCGGAGC
AATTAAGATAATATCGCCTATTGATGATTTGCCGGCTTTTAAAGCAGGGCTTAAAGGTGGGGATTATATAGTAGGCGTGA
ATGACGAGTTAGTCTCTACGCTTGGTCCTAATAAAGCTATAAAAGAGATGCGTGGTACGCCTGGTACTAAGGTTAAATTG
TTGATAATTAAGGAAGAAGAGGCAAAACCGCAAGAGCTAGAGCTTACTCGCGAAATAGTAAAAATCAAGCCGATAAAAGC
ACATTTAGAAAAAAATAATATTGCATATATACGTATAACTACTTTTAATGAGTCAACAATTTCTGAGCTGAAGGCAGCAG
TAAAGAAGTTAAAAACTGAGAGTAAAGATGACCTTAAAGGTATAATTCTAGATTTACGTAATAATGCCGGAGGTATACTC
GATCAAGCTATTGCTGTTAGTGATTATTTTATTGATTCCGGTGTAATTGTAACAACAAAAGGTAGAACTACATCAAGTAA
TAGCGAAATTAAAGCAAATGAGTTTTCGTTAAAAGCTCCCAAAGTACCTATGATAGTTTTAATAAACGGTAATTCTGCCT
CTGCCTCGGAAATAGTTGCCGGAGCTTTGCAAGATCATAAAAGAGCAATAATACTTGGCACTAAGTCTTTCGGTAAAGGA
TCAGTTCAGGCTTTAACGCAAATCAATTCTAGGGCTGCCGTAAAACTGACTATATCTAAATATTACACCCCAAGCGGTCG
TTCTATTCAAGCAGAAGGAATAGAGCCTGATATTTTAATTGAGCCGGCGAAAGTTGAGTATCCAGAAGTGAAAAAAATAG
ATAAGCGTTTTTCTGAGAGTTCTTTAAAAAATTATTTGAAGAATGATAATGAAAAAAACAAAGATAATGCATCTAAAAAC
AAAGATAGCCAAAAAGAAACAAAAGCCAAAAATAATAAACAAGAAGAGAATGAATTATCGGAATTATACAAAAAAGATTA
TCAATTTGCTCGTGCTTATGATGTAATTACAGGGTTGATTATTAATAAGAAGCTGGAAACAAAAGAGAGAGTTAAACAAG
AAGATAAGTAG

Upstream 100 bases:

>100_bases
GCCGTAGGTGACGCGGCAATCTCGTCAAATATCCTAAGATTACTTCGTAATTTTCCTCGCAATGACGCTTTGCTTAAAAA
ACACACATATTTGGAGTATT

Downstream 100 bases:

>100_bases
AGAGGATAATATCATTCTCGGTTTTGCTGCATGGATAGATTCTTCATCATAAGCTACGGAAAAACTGTAAGTTTTGTACG
TACGCGATCTCAGGAACCCT

Product: Carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MLLRLIITLFFIINSICAFAEGEKETENKISNQEAYKQFQDVFERIEKAYVQVPDRQKMIDEAINGMLNSLDPHSSYYTD
EDLEDILTFTKGEFGGIGVEIMYDSGAIKIISPIDDLPAFKAGLKGGDYIVGVNDELVSTLGPNKAIKEMRGTPGTKVKL
LIIKEEEAKPQELELTREIVKIKPIKAHLEKNNIAYIRITTFNESTISELKAAVKKLKTESKDDLKGIILDLRNNAGGIL
DQAIAVSDYFIDSGVIVTTKGRTTSSNSEIKANEFSLKAPKVPMIVLINGNSASASEIVAGALQDHKRAIILGTKSFGKG
SVQALTQINSRAAVKLTISKYYTPSGRSIQAEGIEPDILIEPAKVEYPEVKKIDKRFSESSLKNYLKNDNEKNKDNASKN
KDSQKETKAKNNKQEENELSELYKKDYQFARAYDVITGLIINKKLETKERVKQEDK

Sequences:

>Translated_456_residues
MLLRLIITLFFIINSICAFAEGEKETENKISNQEAYKQFQDVFERIEKAYVQVPDRQKMIDEAINGMLNSLDPHSSYYTD
EDLEDILTFTKGEFGGIGVEIMYDSGAIKIISPIDDLPAFKAGLKGGDYIVGVNDELVSTLGPNKAIKEMRGTPGTKVKL
LIIKEEEAKPQELELTREIVKIKPIKAHLEKNNIAYIRITTFNESTISELKAAVKKLKTESKDDLKGIILDLRNNAGGIL
DQAIAVSDYFIDSGVIVTTKGRTTSSNSEIKANEFSLKAPKVPMIVLINGNSASASEIVAGALQDHKRAIILGTKSFGKG
SVQALTQINSRAAVKLTISKYYTPSGRSIQAEGIEPDILIEPAKVEYPEVKKIDKRFSESSLKNYLKNDNEKNKDNASKN
KDSQKETKAKNNKQEENELSELYKKDYQFARAYDVITGLIINKKLETKERVKQEDK
>Mature_456_residues
MLLRLIITLFFIINSICAFAEGEKETENKISNQEAYKQFQDVFERIEKAYVQVPDRQKMIDEAINGMLNSLDPHSSYYTD
EDLEDILTFTKGEFGGIGVEIMYDSGAIKIISPIDDLPAFKAGLKGGDYIVGVNDELVSTLGPNKAIKEMRGTPGTKVKL
LIIKEEEAKPQELELTREIVKIKPIKAHLEKNNIAYIRITTFNESTISELKAAVKKLKTESKDDLKGIILDLRNNAGGIL
DQAIAVSDYFIDSGVIVTTKGRTTSSNSEIKANEFSLKAPKVPMIVLINGNSASASEIVAGALQDHKRAIILGTKSFGKG
SVQALTQINSRAAVKLTISKYYTPSGRSIQAEGIEPDILIEPAKVEYPEVKKIDKRFSESSLKNYLKNDNEKNKDNASKN
KDSQKETKAKNNKQEENELSELYKKDYQFARAYDVITGLIINKKLETKERVKQEDK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=324, Percent_Identity=29.9382716049383, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 50856; Mature: 50856

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRLIITLFFIINSICAFAEGEKETENKISNQEAYKQFQDVFERIEKAYVQVPDRQKMI
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DEAINGMLNSLDPHSSYYTDEDLEDILTFTKGEFGGIGVEIMYDSGAIKIISPIDDLPAF
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEECCCCCCHHH
KAGLKGGDYIVGVNDELVSTLGPNKAIKEMRGTPGTKVKLLIIKEEEAKPQELELTREIV
HHCCCCCCEEEECCHHHHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
KIKPIKAHLEKNNIAYIRITTFNESTISELKAAVKKLKTESKDDLKGIILDLRNNAGGIL
HHCHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCHH
DQAIAVSDYFIDSGVIVTTKGRTTSSNSEIKANEFSLKAPKVPMIVLINGNSASASEIVA
HHHHHHHHEEECCCEEEEECCCCCCCCCCEEECCEEECCCCCCEEEEEECCCCCHHHHHH
GALQDHKRAIILGTKSFGKGSVQALTQINSRAAVKLTISKYYTPSGRSIQAEGIEPDILI
HHHHCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCEEEECCCCCCEEE
EPAKVEYPEVKKIDKRFSESSLKNYLKNDNEKNKDNASKNKDSQKETKAKNNKQEENELS
ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
ELYKKDYQFARAYDVITGLIINKKLETKERVKQEDK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure
MLLRLIITLFFIINSICAFAEGEKETENKISNQEAYKQFQDVFERIEKAYVQVPDRQKMI
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DEAINGMLNSLDPHSSYYTDEDLEDILTFTKGEFGGIGVEIMYDSGAIKIISPIDDLPAF
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEECCCCCCHHH
KAGLKGGDYIVGVNDELVSTLGPNKAIKEMRGTPGTKVKLLIIKEEEAKPQELELTREIV
HHCCCCCCEEEECCHHHHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
KIKPIKAHLEKNNIAYIRITTFNESTISELKAAVKKLKTESKDDLKGIILDLRNNAGGIL
HHCHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCHH
DQAIAVSDYFIDSGVIVTTKGRTTSSNSEIKANEFSLKAPKVPMIVLINGNSASASEIVA
HHHHHHHHEEECCCEEEEECCCCCCCCCCEEECCEEECCCCCCEEEEEECCCCCHHHHHH
GALQDHKRAIILGTKSFGKGSVQALTQINSRAAVKLTISKYYTPSGRSIQAEGIEPDILI
HHHHCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCEEEECCCCCCEEE
EPAKVEYPEVKKIDKRFSESSLKNYLKNDNEKNKDNASKNKDSQKETKAKNNKQEENELS
ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
ELYKKDYQFARAYDVITGLIINKKLETKERVKQEDK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]