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The map label for this gene is abcT1 [C]

Identifier: 229586300

GI number: 229586300

Start: 81358

End: 83025

Strand: Direct

Name: abcT1 [C]

Synonym: RAF_ORF0083

Alternate gene names: 229586300

Gene position: 81358-83025 (Clockwise)

Preceding gene: 229586299

Following gene: 229586301

Centisome position: 6.36

GC content: 29.8

Gene sequence:

>1668_bases
ATGTCATATCAATATGTTTATGAAATGGTTGGTTTAAGCAAAATTATAAATGGTAAACGAATTTTAAAAGAAACAAATTT
ATCATTTTTACCAAAAGCTAAAATCGGTATAATAGGTCCAAATGGAGCAGGCAAATCGACTTTATTAAAAATAATGGCAG
GTATTGATAAAGAGTTTGAAGGTAAAGCAACAGCTAAAATTGGTATAAAAGTAGGATATTTACCTCAAGAACCGTATCTT
GATGCTAGTAAAAATGTTTTTGATAATATCATAGAAGGTCTTCATGAAAAGAAAAAACTTATTGATGAATTTAATTATAT
AAGTAACAAATTTGCTGCTGAAATCGCTGATGAAGAAATGCAAAAGCTTTTTGATAAACAAGCAGAATTGCAAGAAAAAA
TAGACAATTGTGATGGATGGAATCTAGAACGTGAAATAGAGATCGCAATGCTTGCTTTACGTTGCCCACCAAAAGAAGCA
GATATTACAAAAATTTCCGGTGGAGAAAAAAGAAGAGTGGCTTTATGTAAATTGCTTTTAGAGAAACCTGATATGTTGTT
ACTTGATGAACCTACAAATCATTTGGATGCAGAATCAGTTTCTTGGCTTGAGGATTATTTAAAGCATTATGAAGGTACTG
TAATAGTAATTACCCATGATCGTTATTTTTTAGATAATGTTACAGAATGGATATTAGAAATAGATCGTGGAAATTGTATA
CCGTGGGAATCAAATTATAGTTCTTGGCTTGAGCAGAAGCAAAAAAAATTAGCTTTAGAAAGTAAAGAAGACGATGATAG
AAAAAAACAATTGAATCGTGAACTTGAATGGATTCGTCAAACTCCAAAAGCTAGACAATCAAAAAATAAAGCACGTATTA
CAGCATATCAAGAGTTATTAAATAAACAACAAGAACAAAAAACTGATCCTACTCAAATAATTATACCTAACGGACCTCGT
TTAGGTGATTTTGTTATTGAAGCAGAACATATAACTAAAAAATTTAATAATAAAATATTATTATCAGATTTTAGTTTTAA
AGTTCCACGTGGAGCTATTGTAGGAATTATTGGACCGAATGGAGCAGGTAAGTCTACTTTGTTTAATATTATTACAGGTA
AAATAATGCCAGATAGTGGTTCTATTAAAATTGGTCAAACGGTCAAATTAGGTTATGTCGATCAATCACGGGATCATTTA
GATGATAATAAGACTATATGGGAAGAAATTTCAGAAGGTCTAGATGAATTACAACTTGGTAATAGAATAATTAAAAGTAG
AGCTTATTGTGCAGCTTTTAATTTTAGAGGCGGTGATCAACAAAAAAAAGTTGGACAACTTTCAGGTGGAGAACGTAACA
GAGTACATTTGGCAAAATTACTAAAAGAAGGAGCAAATGTTATATTATTAGATGAGCCGTCTAATGATTTAGATATTGAT
ACGTTAAGAGCACTTGAAGATGCTATTTTAGATTTTGCAGGTTGTGTATTAGTGATTAGTCATGATAGATGGTTTTTAGA
TAGAATAACTACTCATATTATATCATATGATAAAGAAAATAATGCTACATGGTTTGAAGGAAATTATCAAGATTATCATG
AATATATGCTAAGTACTAACGGGGAAAGTATTTTAAATCCAAAATATAAACATAAGAAATTAATATAA

Upstream 100 bases:

>100_bases
CTAATTTTGAATTATATGATCATAGAGCAATAAATTCATACAATACAGTAGTAAATATATATATCGGTGTAAAATAATAA
TATAAGGAAATAAGTAATTT

Downstream 100 bases:

>100_bases
ATATGTCTTTAACACAAATATTATTAATTTTGTTTGTAGGAATATTGGTAACAAAACCGCATGATATTTTTATAATTATT
AAAGAATTAAAAAAAATAAA

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MSYQYVYEMVGLSKIINGKRILKETNLSFLPKAKIGIIGPNGAGKSTLLKIMAGIDKEFEGKATAKIGIKVGYLPQEPYL
DASKNVFDNIIEGLHEKKKLIDEFNYISNKFAAEIADEEMQKLFDKQAELQEKIDNCDGWNLEREIEIAMLALRCPPKEA
DITKISGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVSWLEDYLKHYEGTVIVITHDRYFLDNVTEWILEIDRGNCI
PWESNYSSWLEQKQKKLALESKEDDDRKKQLNRELEWIRQTPKARQSKNKARITAYQELLNKQQEQKTDPTQIIIPNGPR
LGDFVIEAEHITKKFNNKILLSDFSFKVPRGAIVGIIGPNGAGKSTLFNIITGKIMPDSGSIKIGQTVKLGYVDQSRDHL
DDNKTIWEEISEGLDELQLGNRIIKSRAYCAAFNFRGGDQQKKVGQLSGGERNRVHLAKLLKEGANVILLDEPSNDLDID
TLRALEDAILDFAGCVLVISHDRWFLDRITTHIISYDKENNATWFEGNYQDYHEYMLSTNGESILNPKYKHKKLI

Sequences:

>Translated_555_residues
MSYQYVYEMVGLSKIINGKRILKETNLSFLPKAKIGIIGPNGAGKSTLLKIMAGIDKEFEGKATAKIGIKVGYLPQEPYL
DASKNVFDNIIEGLHEKKKLIDEFNYISNKFAAEIADEEMQKLFDKQAELQEKIDNCDGWNLEREIEIAMLALRCPPKEA
DITKISGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVSWLEDYLKHYEGTVIVITHDRYFLDNVTEWILEIDRGNCI
PWESNYSSWLEQKQKKLALESKEDDDRKKQLNRELEWIRQTPKARQSKNKARITAYQELLNKQQEQKTDPTQIIIPNGPR
LGDFVIEAEHITKKFNNKILLSDFSFKVPRGAIVGIIGPNGAGKSTLFNIITGKIMPDSGSIKIGQTVKLGYVDQSRDHL
DDNKTIWEEISEGLDELQLGNRIIKSRAYCAAFNFRGGDQQKKVGQLSGGERNRVHLAKLLKEGANVILLDEPSNDLDID
TLRALEDAILDFAGCVLVISHDRWFLDRITTHIISYDKENNATWFEGNYQDYHEYMLSTNGESILNPKYKHKKLI
>Mature_554_residues
SYQYVYEMVGLSKIINGKRILKETNLSFLPKAKIGIIGPNGAGKSTLLKIMAGIDKEFEGKATAKIGIKVGYLPQEPYLD
ASKNVFDNIIEGLHEKKKLIDEFNYISNKFAAEIADEEMQKLFDKQAELQEKIDNCDGWNLEREIEIAMLALRCPPKEAD
ITKISGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVSWLEDYLKHYEGTVIVITHDRYFLDNVTEWILEIDRGNCIP
WESNYSSWLEQKQKKLALESKEDDDRKKQLNRELEWIRQTPKARQSKNKARITAYQELLNKQQEQKTDPTQIIIPNGPRL
GDFVIEAEHITKKFNNKILLSDFSFKVPRGAIVGIIGPNGAGKSTLFNIITGKIMPDSGSIKIGQTVKLGYVDQSRDHLD
DNKTIWEEISEGLDELQLGNRIIKSRAYCAAFNFRGGDQQKKVGQLSGGERNRVHLAKLLKEGANVILLDEPSNDLDIDT
LRALEDAILDFAGCVLVISHDRWFLDRITTHIISYDKENNATWFEGNYQDYHEYMLSTNGESILNPKYKHKKLI

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=514, Percent_Identity=25.2918287937743, Blast_Score=172, Evalue=7e-43,
Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=27.4401473296501, Blast_Score=167, Evalue=3e-41,
Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=27.4401473296501, Blast_Score=167, Evalue=3e-41,
Organism=Homo sapiens, GI10947135, Length=551, Percent_Identity=26.6787658802178, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI69354671, Length=551, Percent_Identity=26.6787658802178, Blast_Score=163, Evalue=5e-40,
Organism=Homo sapiens, GI4506341, Length=225, Percent_Identity=24.4444444444444, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI31657092, Length=190, Percent_Identity=29.4736842105263, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI27881501, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI30795238, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=55.877034358047, Blast_Score=634, Evalue=0.0,
Organism=Escherichia coli, GI1787182, Length=516, Percent_Identity=34.4961240310078, Blast_Score=312, Evalue=4e-86,
Organism=Escherichia coli, GI1789751, Length=532, Percent_Identity=29.3233082706767, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI1787041, Length=526, Percent_Identity=29.0874524714829, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI87081782, Length=538, Percent_Identity=23.6059479553903, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI48994943, Length=500, Percent_Identity=22.2, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=34.2245989304813, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790525, Length=513, Percent_Identity=22.8070175438596, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081709, Length=241, Percent_Identity=27.3858921161826, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786253, Length=184, Percent_Identity=34.2391304347826, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788225, Length=217, Percent_Identity=26.2672811059908, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=184, Percent_Identity=31.5217391304348, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786563, Length=195, Percent_Identity=27.1794871794872, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787164, Length=182, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789593, Length=199, Percent_Identity=31.1557788944724, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=28.0193236714976, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=23.8493723849372, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1789864, Length=252, Percent_Identity=21.8253968253968, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17559834, Length=563, Percent_Identity=26.6429840142096, Blast_Score=207, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17555318, Length=543, Percent_Identity=25.7826887661142, Blast_Score=179, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17553372, Length=549, Percent_Identity=26.4116575591985, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI115534520, Length=278, Percent_Identity=25.5395683453237, Blast_Score=72, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=536, Percent_Identity=29.6641791044776, Blast_Score=209, Evalue=7e-55,
Organism=Saccharomyces cerevisiae, GI6321121, Length=551, Percent_Identity=26.1343012704174, Blast_Score=177, Evalue=5e-45,
Organism=Saccharomyces cerevisiae, GI6323278, Length=398, Percent_Identity=27.6381909547739, Blast_Score=131, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6324314, Length=392, Percent_Identity=25.765306122449, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6325030, Length=393, Percent_Identity=26.2086513994911, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6320266, Length=379, Percent_Identity=22.1635883905013, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641342, Length=550, Percent_Identity=30.3636363636364, Blast_Score=200, Evalue=2e-51,
Organism=Drosophila melanogaster, GI24666836, Length=499, Percent_Identity=29.0581162324649, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24642252, Length=542, Percent_Identity=26.3837638376384, Blast_Score=185, Evalue=8e-47,
Organism=Drosophila melanogaster, GI18859989, Length=542, Percent_Identity=26.3837638376384, Blast_Score=185, Evalue=8e-47,
Organism=Drosophila melanogaster, GI21357907, Length=184, Percent_Identity=33.695652173913, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574259, Length=178, Percent_Identity=30.3370786516854, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161078426, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24648279, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022374
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 63319; Mature: 63188

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYQYVYEMVGLSKIINGKRILKETNLSFLPKAKIGIIGPNGAGKSTLLKIMAGIDKEFE
CCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
GKATAKIGIKVGYLPQEPYLDASKNVFDNIIEGLHEKKKLIDEFNYISNKFAAEIADEEM
CCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKLFDKQAELQEKIDNCDGWNLEREIEIAMLALRCPPKEADITKISGGEKRRVALCKLLL
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHH
EKPDMLLLDEPTNHLDAESVSWLEDYLKHYEGTVIVITHDRYFLDNVTEWILEIDRGNCI
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
PWESNYSSWLEQKQKKLALESKEDDDRKKQLNRELEWIRQTPKARQSKNKARITAYQELL
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHH
NKQQEQKTDPTQIIIPNGPRLGDFVIEAEHITKKFNNKILLSDFSFKVPRGAIVGIIGPN
HHHHHHCCCCCEEEECCCCCCCHHEEEHHHHHHHHCCEEEEECCCCCCCCCCEEEEECCC
GAGKSTLFNIITGKIMPDSGSIKIGQTVKLGYVDQSRDHLDDNKTIWEEISEGLDELQLG
CCCHHHHHHHHCCCEECCCCCEEECCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
NRIIKSRAYCAAFNFRGGDQQKKVGQLSGGERNRVHLAKLLKEGANVILLDEPSNDLDID
HHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHH
TLRALEDAILDFAGCVLVISHDRWFLDRITTHIISYDKENNATWFEGNYQDYHEYMLSTN
HHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCC
GESILNPKYKHKKLI
CCHHCCCCHHHCCCC
>Mature Secondary Structure 
SYQYVYEMVGLSKIINGKRILKETNLSFLPKAKIGIIGPNGAGKSTLLKIMAGIDKEFE
CHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
GKATAKIGIKVGYLPQEPYLDASKNVFDNIIEGLHEKKKLIDEFNYISNKFAAEIADEEM
CCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKLFDKQAELQEKIDNCDGWNLEREIEIAMLALRCPPKEADITKISGGEKRRVALCKLLL
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHH
EKPDMLLLDEPTNHLDAESVSWLEDYLKHYEGTVIVITHDRYFLDNVTEWILEIDRGNCI
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
PWESNYSSWLEQKQKKLALESKEDDDRKKQLNRELEWIRQTPKARQSKNKARITAYQELL
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHH
NKQQEQKTDPTQIIIPNGPRLGDFVIEAEHITKKFNNKILLSDFSFKVPRGAIVGIIGPN
HHHHHHCCCCCEEEECCCCCCCHHEEEHHHHHHHHCCEEEEECCCCCCCCCCEEEEECCC
GAGKSTLFNIITGKIMPDSGSIKIGQTVKLGYVDQSRDHLDDNKTIWEEISEGLDELQLG
CCCHHHHHHHHCCCEECCCCCEEECCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
NRIIKSRAYCAAFNFRGGDQQKKVGQLSGGERNRVHLAKLLKEGANVILLDEPSNDLDID
HHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHH
TLRALEDAILDFAGCVLVISHDRWFLDRITTHIISYDKENNATWFEGNYQDYHEYMLSTN
HHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCC
GESILNPKYKHKKLI
CCHHCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]