| Definition | Rickettsia africae ESF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_012633 |
| Length | 1,278,540 |
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The map label for this gene is 229586291
Identifier: 229586291
GI number: 229586291
Start: 71813
End: 72661
Strand: Direct
Name: 229586291
Synonym: RAF_ORF0074
Alternate gene names: NA
Gene position: 71813-72661 (Clockwise)
Preceding gene: 229586290
Following gene: 229586293
Centisome position: 5.62
GC content: 33.1
Gene sequence:
>849_bases ATGGCATACCGCACTAATGCAGCTGCTGCTATTAATGTCGGATTCTTTGAAATCGCTGGTAGTGATGACGGCAGACCAAG TCTTATTTTAATGATAGACAGCAAGCTATTTAGCCTTAGAAAACAACTACAAAGTTTGTTAATTATAGATCAGGGCAATA TTCAAATTACCAAGGCTAGTGCAAAAATTTTAGTAGCAATAGGCGATAAATCTGTTATTCCAAATCAAGTTCATTATTTT TCAAACCTAAAAGATACTACTTTCTATAATGATGTTTGGGCGTCTACCACATTAACGTCGTATACTAACAAAGAAATTTT GATTGATCAGAATAGGTCTAATTTTATTGTTACGGCAATAAGTAAGCATGGTGATAATCAAATCCCACAGAAAGGCTTTA TATTGTCCTTTCCACAAGCAACAAGTTTGCCGGTAGTAAATATAAATGATTCTGTAAAGTTAATTTTGGAATTTATCGAT AAAGACGGTAAGCTTATAAATTTAAGTAACACTGCTTCAATAGTAACCGGTATTCCCTTATTGGTTCAAAACGGTAAAAA TGTTGTAGATAATCCAAAGCAAGATGATCCGGCTCATGCTCGTACTGCCTTAGGAGTGTGTAATGACGGCACTATAGTTA TAGTTGTAGTCGAGCATATTTATAAGCAACATGTAAAAGACCTTAAGCTTGTGCAAGTAAGATCAATATTACGGCAAGAG AAAGAAATAAATGTTGATAAATTAATAATCCCTGAAGCTTTGAAAATTTTAGAAAAACACCTTGTTAATTATACTGTGAT AGGATTAACTAAAACAGAACTTGCAGATTATATGTTAACTTGGATATGA
Upstream 100 bases:
>100_bases AAGCATGTGATTCATGTCTTAACTATTGATCCTAAGAATTTTGGGTTAAAACTAGTTAAAGCTCATAATCAGGTGATAAG GCAGAGAAACAGTAAACGTT
Downstream 100 bases:
>100_bases ATCGGCAATCAATTTATACGGTGGCGGTTCTTCTACATTATTCATGGGCGGAAAAATTATAAATAATGTAACAGGTGATG AAGATGAAGCTTTAGGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MAYRTNAAAAINVGFFEIAGSDDGRPSLILMIDSKLFSLRKQLQSLLIIDQGNIQITKASAKILVAIGDKSVIPNQVHYF SNLKDTTFYNDVWASTTLTSYTNKEILIDQNRSNFIVTAISKHGDNQIPQKGFILSFPQATSLPVVNINDSVKLILEFID KDGKLINLSNTASIVTGIPLLVQNGKNVVDNPKQDDPAHARTALGVCNDGTIVIVVVEHIYKQHVKDLKLVQVRSILRQE KEINVDKLIIPEALKILEKHLVNYTVIGLTKTELADYMLTWI
Sequences:
>Translated_282_residues MAYRTNAAAAINVGFFEIAGSDDGRPSLILMIDSKLFSLRKQLQSLLIIDQGNIQITKASAKILVAIGDKSVIPNQVHYF SNLKDTTFYNDVWASTTLTSYTNKEILIDQNRSNFIVTAISKHGDNQIPQKGFILSFPQATSLPVVNINDSVKLILEFID KDGKLINLSNTASIVTGIPLLVQNGKNVVDNPKQDDPAHARTALGVCNDGTIVIVVVEHIYKQHVKDLKLVQVRSILRQE KEINVDKLIIPEALKILEKHLVNYTVIGLTKTELADYMLTWI >Mature_281_residues AYRTNAAAAINVGFFEIAGSDDGRPSLILMIDSKLFSLRKQLQSLLIIDQGNIQITKASAKILVAIGDKSVIPNQVHYFS NLKDTTFYNDVWASTTLTSYTNKEILIDQNRSNFIVTAISKHGDNQIPQKGFILSFPQATSLPVVNINDSVKLILEFIDK DGKLINLSNTASIVTGIPLLVQNGKNVVDNPKQDDPAHARTALGVCNDGTIVIVVVEHIYKQHVKDLKLVQVRSILRQEK EINVDKLIIPEALKILEKHLVNYTVIGLTKTELADYMLTWI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31306; Mature: 31174
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYRTNAAAAINVGFFEIAGSDDGRPSLILMIDSKLFSLRKQLQSLLIIDQGNIQITKAS CCEECCCCEEEEEEEEEEECCCCCCCEEEEEECHHHHHHHHHHHHEEEEECCCEEEEEEC AKILVAIGDKSVIPNQVHYFSNLKDTTFYNDVWASTTLTSYTNKEILIDQNRSNFIVTAI EEEEEEECCCCCCCCHHHHHCCCCCCCEECCHHCCCEEECCCCCEEEEECCCCCEEEEEE SKHGDNQIPQKGFILSFPQATSLPVVNINDSVKLILEFIDKDGKLINLSNTASIVTGIPL ECCCCCCCCCCCEEEECCCCCCCCEEECCCHHHHHHHHHCCCCCEEEECCCCHHHHCCEE LVQNGKNVVDNPKQDDPAHARTALGVCNDGTIVIVVVEHIYKQHVKDLKLVQVRSILRQE EEECCCCCCCCCCCCCCCHHHHHEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH KEINVDKLIIPEALKILEKHLVNYTVIGLTKTELADYMLTWI HHCCCCEEEHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCC >Mature Secondary Structure AYRTNAAAAINVGFFEIAGSDDGRPSLILMIDSKLFSLRKQLQSLLIIDQGNIQITKAS CEECCCCEEEEEEEEEEECCCCCCCEEEEEECHHHHHHHHHHHHEEEEECCCEEEEEEC AKILVAIGDKSVIPNQVHYFSNLKDTTFYNDVWASTTLTSYTNKEILIDQNRSNFIVTAI EEEEEEECCCCCCCCHHHHHCCCCCCCEECCHHCCCEEECCCCCEEEEECCCCCEEEEEE SKHGDNQIPQKGFILSFPQATSLPVVNINDSVKLILEFIDKDGKLINLSNTASIVTGIPL ECCCCCCCCCCCEEEECCCCCCCCEEECCCHHHHHHHHHCCCCCEEEECCCCHHHHCCEE LVQNGKNVVDNPKQDDPAHARTALGVCNDGTIVIVVVEHIYKQHVKDLKLVQVRSILRQE EEECCCCCCCCCCCCCCCHHHHHEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH KEINVDKLIIPEALKILEKHLVNYTVIGLTKTELADYMLTWI HHCCCCEEEHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]