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The map label for this gene is yidC

Identifier: 229586285

GI number: 229586285

Start: 67404

End: 69086

Strand: Direct

Name: yidC

Synonym: RAF_ORF0068

Alternate gene names: 229586285

Gene position: 67404-69086 (Clockwise)

Preceding gene: 229586284

Following gene: 229586286

Centisome position: 5.27

GC content: 30.48

Gene sequence:

>1683_bases
ATGAATAATAATATAATTAATTTAATAGCCGCTATTATACTGTCTTTAAGTATAATTTTCGGTTGGCAGTATTTTGTTGT
AAAACCTGAACAAAAAAAACAGCAACAGCAAATAGCAGTGCAGAAAGCAGAAAATTTAAAGAAACAACAGTTAAAAGCTG
TAGTCGAACCTGCAACTGGTATTGTTGTGCAAGAAGAAAGTCAAGTACAGCGTATTAAAATAGAATCTGAATCACTTACC
GGTTCTATTTCATTAAAAGGACTTAGATTTGATGATTTAATATTAAAGAAATATAAACAAGATTTATCTAAAAATAGTCC
TGAAGTGAGGTTATTTTCACCGGCTAATACAGAAAATGCATATTTTGCTGAAGTTGGTTTAGTTAGTAATTTATCTAGTG
TAAAACTCCCTAACAACGATACTATATGGAATAGTGATAGTGAAATATTAAGCCCTGAAAAACCTGTGCATTTATTTTGG
GTTAATGAAGACGGAGTTAAATTTTTAGTTACTATTACTGTCGATGAAAACTATTTATTTACTATAGAGCAAACCATCGT
TAATAATAGTGATAAAGAACTTCCTGTGCAATCTTACGGTTTAATAAATCGTAAATATATTGCCGTAGAGAAAGCGGTGA
ATATATTACATCAAGGGCCTATCGGGTGTATAGACGAGAATCTTAAAGAATATTCTTATGATGATATTAAAGATAAGAAA
AGTGAAAAATTTGTAGCAAGTAAGGTTGATTGGATAGGGATTACCGATAAATATTGGTTATCTTCCTTGATTCCGGATAA
ATCAAGTAATTACAGCTCGAATTTTAATTATGCTCTTAAGCAAGGGACTGAAAGATATCAGGTAGATTTTATTTCACCGG
TACAAATAATAAAGCCTGGCGAAGATTTTTCAATTAAAAGCAGAATTTTTGCTGGAGCAAAAAAAGTAGACTTGCTTGAT
AAATATGAAAAGCAATATGATATTAAATTATTTGATAGAGCTATTGATTTCGGCTGGTTCTATATAATTACCAAACCGGT
TTTCTACGCCATGAATTTTTTCTATGGCTATGTCGGTAATTTCGGTGTTAGTATATTAATTGTTACGGTTATAATTAAGC
TATTAATGTTTACTTTAGCCAATAAGTCTTATCGTTCGATGAAAAAAATGAAAAATTTACAGCCGGAAATCGATAGGATA
AAAAATTTATACAGTGATGATAAAGCACGTTTAAATCAAGAAATTATGGCTTTATATAAAAAAGAAAAAGTAAATCCGGT
AGCTGGTTGTTTACCTATACTTGTTCAAATTCCGGTATTTTTCTCCATTTATAAAGTATTGTATGTAACTATTGAAATGC
GGCAAGCACCGTTTTACGGTTGGATTAAAGACTTATCTGCATCTGACCCTACTACTATTTTTAATTTATTCGGCTTATTA
CCGTTTTCGCCGCCGTTATTTTTAATGATTGGAGCATGGCCTATTTTAATGGCTATTACTATGTTCTTACAGCAAAAAAT
GAGTCCTGAACCTGCGGATCCGATGCAAGCTCAAGTAATGAAATTTATGCCGCTAATTTTTTTATTTATGTTTAGTAGTT
TTCCTGTGGGACTTTTAATATATTGGTCTTGGAATAATATTCTATCCATCATTCAACAATATTATATTAATAAATTTAAT
TAA

Upstream 100 bases:

>100_bases
CTACTTTTGAAAGCAAAGAAGTATATTATACTACTTGATTATTTACTCTAAATGCTTTAAAACTTAAAGCTTTAAAAATA
TTAAAATTTAAGACCTAGGA

Downstream 100 bases:

>100_bases
TGAGAATAGATAAAAATTTACCTAATTATTTAACTATTGCTCGAATAATGGTAATTCCAGTTATTATACTGGTATTTTAT
ATAAATAATTCACTTGCACG

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MNNNIINLIAAIILSLSIIFGWQYFVVKPEQKKQQQQIAVQKAENLKKQQLKAVVEPATGIVVQEESQVQRIKIESESLT
GSISLKGLRFDDLILKKYKQDLSKNSPEVRLFSPANTENAYFAEVGLVSNLSSVKLPNNDTIWNSDSEILSPEKPVHLFW
VNEDGVKFLVTITVDENYLFTIEQTIVNNSDKELPVQSYGLINRKYIAVEKAVNILHQGPIGCIDENLKEYSYDDIKDKK
SEKFVASKVDWIGITDKYWLSSLIPDKSSNYSSNFNYALKQGTERYQVDFISPVQIIKPGEDFSIKSRIFAGAKKVDLLD
KYEKQYDIKLFDRAIDFGWFYIITKPVFYAMNFFYGYVGNFGVSILIVTVIIKLLMFTLANKSYRSMKKMKNLQPEIDRI
KNLYSDDKARLNQEIMALYKKEKVNPVAGCLPILVQIPVFFSIYKVLYVTIEMRQAPFYGWIKDLSASDPTTIFNLFGLL
PFSPPLFLMIGAWPILMAITMFLQQKMSPEPADPMQAQVMKFMPLIFLFMFSSFPVGLLIYWSWNNILSIIQQYYINKFN

Sequences:

>Translated_560_residues
MNNNIINLIAAIILSLSIIFGWQYFVVKPEQKKQQQQIAVQKAENLKKQQLKAVVEPATGIVVQEESQVQRIKIESESLT
GSISLKGLRFDDLILKKYKQDLSKNSPEVRLFSPANTENAYFAEVGLVSNLSSVKLPNNDTIWNSDSEILSPEKPVHLFW
VNEDGVKFLVTITVDENYLFTIEQTIVNNSDKELPVQSYGLINRKYIAVEKAVNILHQGPIGCIDENLKEYSYDDIKDKK
SEKFVASKVDWIGITDKYWLSSLIPDKSSNYSSNFNYALKQGTERYQVDFISPVQIIKPGEDFSIKSRIFAGAKKVDLLD
KYEKQYDIKLFDRAIDFGWFYIITKPVFYAMNFFYGYVGNFGVSILIVTVIIKLLMFTLANKSYRSMKKMKNLQPEIDRI
KNLYSDDKARLNQEIMALYKKEKVNPVAGCLPILVQIPVFFSIYKVLYVTIEMRQAPFYGWIKDLSASDPTTIFNLFGLL
PFSPPLFLMIGAWPILMAITMFLQQKMSPEPADPMQAQVMKFMPLIFLFMFSSFPVGLLIYWSWNNILSIIQQYYINKFN
>Mature_560_residues
MNNNIINLIAAIILSLSIIFGWQYFVVKPEQKKQQQQIAVQKAENLKKQQLKAVVEPATGIVVQEESQVQRIKIESESLT
GSISLKGLRFDDLILKKYKQDLSKNSPEVRLFSPANTENAYFAEVGLVSNLSSVKLPNNDTIWNSDSEILSPEKPVHLFW
VNEDGVKFLVTITVDENYLFTIEQTIVNNSDKELPVQSYGLINRKYIAVEKAVNILHQGPIGCIDENLKEYSYDDIKDKK
SEKFVASKVDWIGITDKYWLSSLIPDKSSNYSSNFNYALKQGTERYQVDFISPVQIIKPGEDFSIKSRIFAGAKKVDLLD
KYEKQYDIKLFDRAIDFGWFYIITKPVFYAMNFFYGYVGNFGVSILIVTVIIKLLMFTLANKSYRSMKKMKNLQPEIDRI
KNLYSDDKARLNQEIMALYKKEKVNPVAGCLPILVQIPVFFSIYKVLYVTIEMRQAPFYGWIKDLSASDPTTIFNLFGLL
PFSPPLFLMIGAWPILMAITMFLQQKMSPEPADPMQAQVMKFMPLIFLFMFSSFPVGLLIYWSWNNILSIIQQYYINKFN

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=513, Percent_Identity=30.2144249512671, Blast_Score=248, Evalue=1e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA_RICAE (C3PM83)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002844786.1
- GeneID:   7815911
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0068
- OMA:   FVTIEMR
- ProtClustDB:   PRK01318
- HAMAP:   MF_01810
- InterPro:   IPR019998
- InterPro:   IPR001708
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- PRINTS:   PR01900
- TIGRFAMs:   TIGR03593
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 64486; Mature: 64486

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x20dcef38)-; HASH(0x2074226c)-; HASH(0x200c5e38)-; HASH(0x206dbec8)-; HASH(0x20709a3c)-; HASH(0x1f4f39e4)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNIINLIAAIILSLSIIFGWQYFVVKPEQKKQQQQIAVQKAENLKKQQLKAVVEPATG
CCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IVVQEESQVQRIKIESESLTGSISLKGLRFDDLILKKYKQDLSKNSPEVRLFSPANTENA
EEEECCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
YFAEVGLVSNLSSVKLPNNDTIWNSDSEILSPEKPVHLFWVNEDGVKFLVTITVDENYLF
EEEEHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEE
TIEQTIVNNSDKELPVQSYGLINRKYIAVEKAVNILHQGPIGCIDENLKEYSYDDIKDKK
EEEHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCH
SEKFVASKVDWIGITDKYWLSSLIPDKSSNYSSNFNYALKQGTERYQVDFISPVQIIKPG
HHHHHHHCCCEECCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEEEEECCEEEECCC
EDFSIKSRIFAGAKKVDLLDKYEKQYDIKLFDRAIDFGWFYIITKPVFYAMNFFYGYVGN
CCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH
FGVSILIVTVIIKLLMFTLANKSYRSMKKMKNLQPEIDRIKNLYSDDKARLNQEIMALYK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
KEKVNPVAGCLPILVQIPVFFSIYKVLYVTIEMRQAPFYGWIKDLSASDPTTIFNLFGLL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHCCCCCCHHHHHHHHHC
PFSPPLFLMIGAWPILMAITMFLQQKMSPEPADPMQAQVMKFMPLIFLFMFSSFPVGLLI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
YWSWNNILSIIQQYYINKFN
EECHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MNNNIINLIAAIILSLSIIFGWQYFVVKPEQKKQQQQIAVQKAENLKKQQLKAVVEPATG
CCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IVVQEESQVQRIKIESESLTGSISLKGLRFDDLILKKYKQDLSKNSPEVRLFSPANTENA
EEEECCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
YFAEVGLVSNLSSVKLPNNDTIWNSDSEILSPEKPVHLFWVNEDGVKFLVTITVDENYLF
EEEEHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEE
TIEQTIVNNSDKELPVQSYGLINRKYIAVEKAVNILHQGPIGCIDENLKEYSYDDIKDKK
EEEHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCH
SEKFVASKVDWIGITDKYWLSSLIPDKSSNYSSNFNYALKQGTERYQVDFISPVQIIKPG
HHHHHHHCCCEECCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEEEEECCEEEECCC
EDFSIKSRIFAGAKKVDLLDKYEKQYDIKLFDRAIDFGWFYIITKPVFYAMNFFYGYVGN
CCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH
FGVSILIVTVIIKLLMFTLANKSYRSMKKMKNLQPEIDRIKNLYSDDKARLNQEIMALYK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
KEKVNPVAGCLPILVQIPVFFSIYKVLYVTIEMRQAPFYGWIKDLSASDPTTIFNLFGLL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHCCCCCCHHHHHHHHHC
PFSPPLFLMIGAWPILMAITMFLQQKMSPEPADPMQAQVMKFMPLIFLFMFSSFPVGLLI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
YWSWNNILSIIQQYYINKFN
EECHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA