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The map label for this gene is dapB [H]

Identifier: 229258268

GI number: 229258268

Start: 4253514

End: 4254311

Strand: Reverse

Name: dapB [H]

Synonym: Bxe_A0573

Alternate gene names: 229258268

Gene position: 4254311-4253514 (Counterclockwise)

Preceding gene: 91785207

Following gene: 91785205

Centisome position: 86.9

GC content: 62.66

Gene sequence:

>798_bases
ATGAAAATTGCCATTGCTGGCGCATCGGGCCGTATGGGCCGCATGCTCATCGAAACCGTCCTCAATGATTCCGACGCTAC
GCTGTCCGGCGCGCTCGACCGCGTGGGCTCCCCGCAGCTCGGTCAGGACGCCGGCGCATTTCTCGGCAAACAGACGGGCG
TCGTGCTGACCGACGACATCGAGCGCGTGTTCGCCGAATCCGACTACCTGATCGACTTCACGCGCCCGGAAGGCACGCTG
GTGCATCTGGAAGCGGCGCAGCGTCACAACGTCAAAATGGTGATCGGCACAACCGGCTTCGACAACGAGCAGAAGGCGCA
ACTGCGCGCAGCGGCGGACAGGATCGCCATCATGTTCGCGTCGAACATGAGCGTGGGCGTGAACGTCACGCTGAAGCTGC
TCGAATATGCCGCGAAGCATTTCGCGACCGGCTACGACATCGAGATCATCGAGGCGCATCACCGCCATAAGGTCGACGCG
CCGTCCGGCACCGCATTGACAATGGGTGAAGTAATCGCCCACGCGCTCGGCCGCAATCTCGACGACTGCGCGGTCTACAG
CCGCGAAGGCGTGACCGGCGAACGCGACCCGTCCACGATCGGTTTTTCGGCGATTCGCGGCGGCGATATCGTCGGCGACC
ATACGGTGCTGTTTGCGGGCATCGGCGAGCGCATCGAGATTACGCACAAGTCGGCGAGCCGTCTGTCGTACGCGCAAGGC
GCGCTTCGTGCTGTACGTTTCCTCGAAGGCCACGCAACCGGCTTTTTCGACATGCAGGACGTACTTGGCCTGCGTTGA

Upstream 100 bases:

>100_bases
CGGTTCTCTGCCTGTTTCAGTCATGCGCGGCGCACGGGTGCTGCCCGCCGCCGCTTTCGCCCGCTTTTGCCGGGTTTTGC
CTTTTCGAACCCTCGTAGCC

Downstream 100 bases:

>100_bases
ACGCTGAGTTGAACGTATTCTGAGCGGATCTCGGGCGCATTGCGTTTCCCGGCGCGTCCGTGCAATCACTACTCCACGGC
GAGGTCAGATGGCAGGCAGC

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKIAIAGASGRMGRMLIETVLNDSDATLSGALDRVGSPQLGQDAGAFLGKQTGVVLTDDIERVFAESDYLIDFTRPEGTL
VHLEAAQRHNVKMVIGTTGFDNEQKAQLRAAADRIAIMFASNMSVGVNVTLKLLEYAAKHFATGYDIEIIEAHHRHKVDA
PSGTALTMGEVIAHALGRNLDDCAVYSREGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRLSYAQG
ALRAVRFLEGHATGFFDMQDVLGLR

Sequences:

>Translated_265_residues
MKIAIAGASGRMGRMLIETVLNDSDATLSGALDRVGSPQLGQDAGAFLGKQTGVVLTDDIERVFAESDYLIDFTRPEGTL
VHLEAAQRHNVKMVIGTTGFDNEQKAQLRAAADRIAIMFASNMSVGVNVTLKLLEYAAKHFATGYDIEIIEAHHRHKVDA
PSGTALTMGEVIAHALGRNLDDCAVYSREGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRLSYAQG
ALRAVRFLEGHATGFFDMQDVLGLR
>Mature_265_residues
MKIAIAGASGRMGRMLIETVLNDSDATLSGALDRVGSPQLGQDAGAFLGKQTGVVLTDDIERVFAESDYLIDFTRPEGTL
VHLEAAQRHNVKMVIGTTGFDNEQKAQLRAAADRIAIMFASNMSVGVNVTLKLLEYAAKHFATGYDIEIIEAHHRHKVDA
PSGTALTMGEVIAHALGRNLDDCAVYSREGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRLSYAQG
ALRAVRFLEGHATGFFDMQDVLGLR

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=265, Percent_Identity=60, Blast_Score=292, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28426; Mature: 28426

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAIAGASGRMGRMLIETVLNDSDATLSGALDRVGSPQLGQDAGAFLGKQTGVVLTDDI
CEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEHHH
ERVFAESDYLIDFTRPEGTLVHLEAAQRHNVKMVIGTTGFDNEQKAQLRAAADRIAIMFA
HHHHCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHEEEEEEE
SNMSVGVNVTLKLLEYAAKHFATGYDIEIIEAHHRHKVDAPSGTALTMGEVIAHALGRNL
CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCC
DDCAVYSREGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRLSYAQG
CHHHEECCCCCCCCCCCCCCCHHEECCCCEECCCEEEEECCCCEEEEECCCHHHHHHHHH
ALRAVRFLEGHATGFFDMQDVLGLR
HHHHHHHHHCCCCCEECHHHHHCCC
>Mature Secondary Structure
MKIAIAGASGRMGRMLIETVLNDSDATLSGALDRVGSPQLGQDAGAFLGKQTGVVLTDDI
CEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEHHH
ERVFAESDYLIDFTRPEGTLVHLEAAQRHNVKMVIGTTGFDNEQKAQLRAAADRIAIMFA
HHHHCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHEEEEEEE
SNMSVGVNVTLKLLEYAAKHFATGYDIEIIEAHHRHKVDAPSGTALTMGEVIAHALGRNL
CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCC
DDCAVYSREGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRLSYAQG
CHHHEECCCCCCCCCCCCCCCHHEECCCCEECCCEEEEECCCCEEEEECCCHHHHHHHHH
ALRAVRFLEGHATGFFDMQDVLGLR
HHHHHHHHHCCCCCEECHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA