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The map label for this gene is ybeY [C]

Identifier: 228906475

GI number: 228906475

Start: 835359

End: 836174

Strand: Direct

Name: ybeY [C]

Synonym: azo0780

Alternate gene names: 228906475

Gene position: 835359-836174 (Clockwise)

Preceding gene: 119897070

Following gene: 119897072

Centisome position: 19.09

GC content: 68.87

Gene sequence:

>816_bases
ATGACAACCAGGCGGCGCGACAGGCCGACGCCCACAAGAAGGATGCAGGTGAAGAACATGCCTAAGCAGGCGGACGGGGT
GCGCATCGTCGCGGTGGATGCCGCCGGCAAGACCTCGCGGATCAAGGCCGAGCGCCTGGAGATCGACTACGGCGACGGCC
GCCGCCTGACCCTGACGCTGCCCAACGACGGGTGGGCGCATCTCGACATCGAAGCCGACGTGGCCGGGGACGACGACGGC
GACCTGCCGGTGATCACGATCCAGCCGAGCGCGTGCAATGCGGTCGCGCTGCGGGTCGAGGTCGTGCAGCAACCGCAGGT
CGCCGACATCGACCTGCCGGTGGCCGCCAAGCTGCCGGTGCTGACGCTGGAGGTGCAGAAGGCGCTCGACGGTGGCGACA
AGGCGGCCGCCCCCAAGAAGCACCAGATCCGGCGCTGGGCGCAGGCCGCGCTGCGCACCGACGCCGAGGTCACCGTCCGG
CTGGTCGGCGAGACCGAGGGGCGGGCGCTCAACCTGGGGTATCGCGGCAAGGACTACGCCACCAACGTCCTGACCTTCGT
CTATGGTGAGGAAGGAGGCGCTCCGGCGGTCGAAGGCATGCCCTTGATGGGCGATCTGGTGCTGTGCGTCCCCGTGGTGG
TGCGTGAAGCGGCCGAGCAGGGCAAGGCGCTCGATGCCCATTTCGCCCATCTGGTGGTGCACGGCATGCTGCATCTGCAG
GGCCTGGACCACGAAGACGACGCCGAGGCCGAGGCGATGGAAACGGCGGAGACGAACATTCTGCGGGGCCTCGGCTACGC
CAACCCTTACGCCTGA

Upstream 100 bases:

>100_bases
GCGCGCGAGGTGCTTGCCGGCGTGCGCGGGATCGCATTTACCGAATTCAAGAAGGAAGACGTGGTGCGCCATCCGCTGGT
CGCACGCATCGTCGAAGCCT

Downstream 100 bases:

>100_bases
GGAGGCACGCGGGAAGATCGAGGATTTGGGAGCGTACGTAACACGCATGAAACTTGCTCGGTCCCAAATCCTGGTTCTTG
TCTACCGCACCCTACATGGA

Product: unkown domain/metalloprotease fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTTRRRDRPTPTRRMQVKNMPKQADGVRIVAVDAAGKTSRIKAERLEIDYGDGRRLTLTLPNDGWAHLDIEADVAGDDDG
DLPVITIQPSACNAVALRVEVVQQPQVADIDLPVAAKLPVLTLEVQKALDGGDKAAAPKKHQIRRWAQAALRTDAEVTVR
LVGETEGRALNLGYRGKDYATNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALDAHFAHLVVHGMLHLQ
GLDHEDDAEAEAMETAETNILRGLGYANPYA

Sequences:

>Translated_271_residues
MTTRRRDRPTPTRRMQVKNMPKQADGVRIVAVDAAGKTSRIKAERLEIDYGDGRRLTLTLPNDGWAHLDIEADVAGDDDG
DLPVITIQPSACNAVALRVEVVQQPQVADIDLPVAAKLPVLTLEVQKALDGGDKAAAPKKHQIRRWAQAALRTDAEVTVR
LVGETEGRALNLGYRGKDYATNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALDAHFAHLVVHGMLHLQ
GLDHEDDAEAEAMETAETNILRGLGYANPYA
>Mature_270_residues
TTRRRDRPTPTRRMQVKNMPKQADGVRIVAVDAAGKTSRIKAERLEIDYGDGRRLTLTLPNDGWAHLDIEADVAGDDDGD
LPVITIQPSACNAVALRVEVVQQPQVADIDLPVAAKLPVLTLEVQKALDGGDKAAAPKKHQIRRWAQAALRTDAEVTVRL
VGETEGRALNLGYRGKDYATNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALDAHFAHLVVHGMLHLQG
LDHEDDAEAEAMETAETNILRGLGYANPYA

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=153, Percent_Identity=47.0588235294118, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 29306; Mature: 29174

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRRRDRPTPTRRMQVKNMPKQADGVRIVAVDAAGKTSRIKAERLEIDYGDGRRLTLTL
CCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEE
PNDGWAHLDIEADVAGDDDGDLPVITIQPSACNAVALRVEVVQQPQVADIDLPVAAKLPV
CCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCE
LTLEVQKALDGGDKAAAPKKHQIRRWAQAALRTDAEVTVRLVGETEGRALNLGYRGKDYA
EEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCHH
TNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALDAHFAHLVVHGMLHLQ
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GLDHEDDAEAEAMETAETNILRGLGYANPYA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTRRRDRPTPTRRMQVKNMPKQADGVRIVAVDAAGKTSRIKAERLEIDYGDGRRLTLTL
CCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEE
PNDGWAHLDIEADVAGDDDGDLPVITIQPSACNAVALRVEVVQQPQVADIDLPVAAKLPV
CCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCE
LTLEVQKALDGGDKAAAPKKHQIRRWAQAALRTDAEVTVRLVGETEGRALNLGYRGKDYA
EEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCHH
TNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALDAHFAHLVVHGMLHLQ
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GLDHEDDAEAEAMETAETNILRGLGYANPYA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA