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The map label for this gene is rpoH

Identifier: 227828172

GI number: 227828172

Start: 1750554

End: 1750808

Strand: Direct

Name: rpoH

Synonym: M1425_1910

Alternate gene names: 227828172

Gene position: 1750554-1750808 (Clockwise)

Preceding gene: 227828170

Following gene: 227828173

Centisome position: 67.1

GC content: 35.69

Gene sequence:

>255_bases
ATGAGAGGATCATCTAATAGGAAAATTGATCCAAGAATTCATTATCTTGTACCTAAGCATGAGGTACTTAGTATCGATGA
AGCGTATAAAATTCTAAAAGAATTAGGAATTAGGCCAGAACAATTGCCTTGGATAAGGGCCTCAGATCCCGTTGCTAGAA
GTATAAATGCGAAACCAGGGGATATAATTAGAATTATAAGGAAGAGTCAATTATATGGAGAAGTTGTCTCGTATAGGTAT
GTAATTAGTGGGTGA

Upstream 100 bases:

>100_bases
AAGTACTTAAAAGCTAGCGCATTGAATATTATATAGCCTATTAAGTAAGTCAGAGTAAAACTCTTATTAACCAAATGTAG
TATGTGAATAATGGTTAATA

Downstream 100 bases:

>100_bases
ATGAGTTGTCATCTAATTTAAGCATTGATGAAAAATGGAAAGTTATCGAAGCCTACTTTAAATCCAAGGGCTTAGTTAGA
CAACATCTGGATTCATACAA

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MRGSSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRY
VISG

Sequences:

>Translated_84_residues
MRGSSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRY
VISG
>Mature_84_residues
MRGSSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRY
VISG

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family

Homologues:

Organism=Saccharomyces cerevisiae, GI6319630, Length=69, Percent_Identity=44.9275362318841, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOH_SULIA (C3MZM6)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843903.1
- GeneID:   7813068
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1987
- OMA:   IKRKSPT
- ProtClustDB:   PRK09570
- HAMAP:   MF_00025
- InterPro:   IPR020609
- InterPro:   IPR000783
- InterPro:   IPR020608
- Gene3D:   G3DSA:3.90.940.20
- ProDom:   PD005155

Pfam domain/function: PF01191 RNA_pol_Rpb5_C; SSF55287 RNApol_RPB5_like

EC number: =2.7.7.6

Molecular weight: Translated: 9671; Mature: 9671

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPG
CCCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHCCCCCCCCEECCCCCCHHCCCCCCC
DIIRIIRKSQLYGEVVSYRYVISG
HHHHHHHHHHHHHHHHHEEEEECC
>Mature Secondary Structure
MRGSSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPG
CCCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHCCCCCCCCEECCCCCCHHCCCCCCC
DIIRIIRKSQLYGEVVSYRYVISG
HHHHHHHHHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA