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The map label for this gene is xerD [C]

Identifier: 227827993

GI number: 227827993

Start: 1607416

End: 1608291

Strand: Direct

Name: xerD [C]

Synonym: M1425_1729

Alternate gene names: 227827993

Gene position: 1607416-1608291 (Clockwise)

Preceding gene: 227827990

Following gene: 227827998

Centisome position: 61.61

GC content: 34.82

Gene sequence:

>876_bases
GTGAAACTTGAGCTGGGTTCTCCACCAGAATCTGGAGATCTTTATAACGCTTTCATAAACGCGTTAGTTTTAGCAGGGGC
CGGAAATGGAACTATTAAGCTTTACTCCACCGCAGTAAAGGACTTCTTGGACTTTATAAATAAGGATCCTAGAAAGGTTA
CTAGCGAAGATTTAAACAAATGGATTTCTAATCTGTTAAACAGAGAGGGTAAGGTTAAAGGAGATGATGTGGAAAAAAGG
AGAGCTAAGAGTGTTACAATTAGATATTATATAATTGCAGTGAGAAGATTCCTTAAATGGCTTAACGTTTCTGTAAAGCC
ACCTATTCCTAAAGTAAGGAGAAAAGAAGTTAAAGCTCTAGATGAGAGTCAAATTCAGAAAGTTCTTAACACGTGCAAGA
GAACTAAGGATAAATTAATAATAAGATTATTATTAGATACTGGCTTGCGTGCAAATGAACTACTATCGGTATTAGTAAAG
GATGTGGATTTGGAAAATAACATGATTAGAGTCAGGAATACTAAGAATGGTGAGGAAAGAGTAGTTTTCTTTACCGATGA
GACTAAGCAACTGTTGAGAAAATACATGAAGGGAAAGAAACTTGATGAGAAGTTATTTGATATAACTTACGATGCTTTAT
ATAGAAAGCTAAAGAGATTAGGCAATAAGGTTGAAATTGAGTTAAGACCACACATTTTAAGGCACACCTTCGCTACGTTA
TCACTAAAAAGGGGAATTAATGTAATAACGTTGCAAAAGCTTCTAGGACATAAGGATATAAAAACAACCCAAATTTATAC
ACATCTAGTTTTAGACGACTTAAGGAATGAATACCTTAAGGCAATGTCAAGCTCTTCCAGTAAAACGCCACTTTAA

Upstream 100 bases:

>100_bases
ACAATAGTGAAATCAGAAGTATTGATACCATAGTAAGGTAAGTAATACCATATTATTAAGAGTTTATCCTTTTGAGACTT
AACTCCACTATATATCATAC

Downstream 100 bases:

>100_bases
CATTTCACTAACATATGACGCCAAATCTCTAATGCTATTGAATGAAGCAGTTTGTAAATGTAAGTATTCAAATTTAGCTT
GGTTTTCTAGCATTTTCTGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKLELGSPPESGDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFINKDPRKVTSEDLNKWISNLLNREGKVKGDDVEKR
RAKSVTIRYYIIAVRRFLKWLNVSVKPPIPKVRRKEVKALDESQIQKVLNTCKRTKDKLIIRLLLDTGLRANELLSVLVK
DVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKYMKGKKLDEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATL
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPL

Sequences:

>Translated_291_residues
MKLELGSPPESGDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFINKDPRKVTSEDLNKWISNLLNREGKVKGDDVEKR
RAKSVTIRYYIIAVRRFLKWLNVSVKPPIPKVRRKEVKALDESQIQKVLNTCKRTKDKLIIRLLLDTGLRANELLSVLVK
DVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKYMKGKKLDEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATL
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPL
>Mature_291_residues
MKLELGSPPESGDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFINKDPRKVTSEDLNKWISNLLNREGKVKGDDVEKR
RAKSVTIRYYIIAVRRFLKWLNVSVKPPIPKVRRKEVKALDESQIQKVLNTCKRTKDKLIIRLLLDTGLRANELLSVLVK
DVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKYMKGKKLDEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATL
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=213, Percent_Identity=30.0469483568075, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1790244, Length=227, Percent_Identity=27.3127753303965, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33579; Mature: 33579

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLELGSPPESGDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFINKDPRKVTSEDLNK
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH
WISNLLNREGKVKGDDVEKRRAKSVTIRYYIIAVRRFLKWLNVSVKPPIPKVRRKEVKAL
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
DESQIQKVLNTCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEER
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
VVFFTDETKQLLRKYMKGKKLDEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATL
EEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPL
HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLELGSPPESGDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFINKDPRKVTSEDLNK
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH
WISNLLNREGKVKGDDVEKRRAKSVTIRYYIIAVRRFLKWLNVSVKPPIPKVRRKEVKAL
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
DESQIQKVLNTCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEER
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
VVFFTDETKQLLRKYMKGKKLDEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATL
EEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPL
HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA