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The map label for this gene is rps17p [H]

Identifier: 227827700

GI number: 227827700

Start: 1344944

End: 1345288

Strand: Direct

Name: rps17p [H]

Synonym: M1425_1429

Alternate gene names: 227827700

Gene position: 1344944-1345288 (Clockwise)

Preceding gene: 227827699

Following gene: 227827701

Centisome position: 51.55

GC content: 39.13

Gene sequence:

>345_bases
ATGGGATCTAAGGGGAAGATGGTAAAGGACCCGGGAATACCTAATGTTGTTATTCCCGAGAAGGCATGCGAAGATGAAGA
TTGCCCTTATCATGGATCATTGAGAGTTAGGGGCATTACACTGGAAGGAGTCATTGTAAAGTATAAAGGTACTAAAGCTG
CAGTTATAGAAAGGCAATACTTATACTATGACTCGAAATATAAGAGATATGAAAGGAGAAGGAGTAGGATACATGCTCAT
GTACCACCGTGTGTTAACGTTAGAGAGGGAGATAAAGTTATAATTGGCGAATGCAGACCTCTTTCTAAATCTATAAGTTT
TGTGGTATTAAGCAAGGTGAGTTAA

Upstream 100 bases:

>100_bases
AGCTCATGGTATATTTGAGATAACTTTTAAAGGTAAGTCTTTTATAATAGCTGGCTATAGGCTGGTAAGAAAACCTTGGA
GAAGAATTTAGGTGAGCTAG

Downstream 100 bases:

>100_bases
AGTGTCAGAAAAGATTCAAGTTTTAGGATCCAGAAAAGGTTTAACGCCAAGTCTCCAGCATTATTCAGTAGTTAACGTTG
CTGATAATAGTGGAGCAAAA

Product: 30S ribosomal protein S17P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MGSKGKMVKDPGIPNVVIPEKACEDEDCPYHGSLRVRGITLEGVIVKYKGTKAAVIERQYLYYDSKYKRYERRRSRIHAH
VPPCVNVREGDKVIIGECRPLSKSISFVVLSKVS

Sequences:

>Translated_114_residues
MGSKGKMVKDPGIPNVVIPEKACEDEDCPYHGSLRVRGITLEGVIVKYKGTKAAVIERQYLYYDSKYKRYERRRSRIHAH
VPPCVNVREGDKVIIGECRPLSKSISFVVLSKVS
>Mature_113_residues
GSKGKMVKDPGIPNVVIPEKACEDEDCPYHGSLRVRGITLEGVIVKYKGTKAAVIERQYLYYDSKYKRYERRRSRIHAHV
PPCVNVREGDKVIIGECRPLSKSISFVVLSKVS

Specific function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA [H]

COG id: COG0186

COG function: function code J; Ribosomal protein S17

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S17P family [H]

Homologues:

Organism=Homo sapiens, GI4506681, Length=97, Percent_Identity=44.3298969072165, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17542016, Length=87, Percent_Identity=47.1264367816092, Blast_Score=89, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6320228, Length=96, Percent_Identity=41.6666666666667, Blast_Score=82, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319522, Length=96, Percent_Identity=41.6666666666667, Blast_Score=82, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24652922, Length=87, Percent_Identity=45.9770114942529, Blast_Score=82, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24652924, Length=87, Percent_Identity=45.9770114942529, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000266
- InterPro:   IPR019978
- InterPro:   IPR019979
- ProDom:   PD001295 [H]

Pfam domain/function: PF00366 Ribosomal_S17 [H]

EC number: NA

Molecular weight: Translated: 12894; Mature: 12763

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00056 RIBOSOMAL_S17

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKGKMVKDPGIPNVVIPEKACEDEDCPYHGSLRVRGITLEGVIVKYKGTKAAVIERQY
CCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECEEEEEECCCEEEEEEEEE
LYYDSKYKRYERRRSRIHAHVPPCVNVREGDKVIIGECRPLSKSISFVVLSKVS
EEECCHHHHHHHHHHCEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
GSKGKMVKDPGIPNVVIPEKACEDEDCPYHGSLRVRGITLEGVIVKYKGTKAAVIERQY
CCCCCEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECEEEEEECCCEEEEEEEEE
LYYDSKYKRYERRRSRIHAHVPPCVNVREGDKVIIGECRPLSKSISFVVLSKVS
EEECCHHHHHHHHHHCEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10701121; 11427726 [H]