Click here to switch to the map view.

The map label for this gene is 227827662

Identifier: 227827662

GI number: 227827662

Start: 1315967

End: 1316308

Strand: Direct

Name: 227827662

Synonym: M1425_1391

Alternate gene names: NA

Gene position: 1315967-1316308 (Clockwise)

Preceding gene: 227827661

Following gene: 227827663

Centisome position: 50.44

GC content: 33.33

Gene sequence:

>342_bases
TTGTCATCTGTATACATAGTTGAGGAGCACTATATTCCTTACTCAGTAGCGAAAAAATTACTAAGTGATGTAATTAAATC
TGGCAGTTCATCTAATTTATTACAAAGGACTTATGATTATTTAAATAGTGTAGAGAAATGCGATGCTGAGTCCGCACAGA
AGGTTGTTGAAGAGTTGAGCAGTATCATAAGTAGGGAAGATGTTAGAGCGGTTTTAGCTAGTATTTGCCCTATTACACTT
GACGAGGTAAGGAGTATTTTGATAATGGACAGTAATAGGACATATACTTCTGAGGACATACAAAAAATAATTGATATAAT
TAGGAAATACATTAAGAGTTGA

Upstream 100 bases:

>100_bases
AGGGCATATTTAGTTTCGGTCACATTGGGCGATAAGGAAAAGGTAATAATTGTTAGGCCTGAACATTTGGTTTCTTTTAG
TTCTAGTGGGTGATTAGTAT

Downstream 100 bases:

>100_bases
GTTTTTACTTTTAGAATCTATTACTACTTAGGGAAGTAGAATTGCAAAGAAAAAGGGTAGTAAAGGAGCGAGTAGTGTAT
GTTTTAGATTATATGAGGGA

Product: RNA polymerase Rpb4

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSSVYIVEEHYIPYSVAKKLLSDVIKSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEELSSIISREDVRAVLASICPITL
DEVRSILIMDSNRTYTSEDIQKIIDIIRKYIKS

Sequences:

>Translated_113_residues
MSSVYIVEEHYIPYSVAKKLLSDVIKSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEELSSIISREDVRAVLASICPITL
DEVRSILIMDSNRTYTSEDIQKIIDIIRKYIKS
>Mature_112_residues
SSVYIVEEHYIPYSVAKKLLSDVIKSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEELSSIISREDVRAVLASICPITLD
EVRSILIMDSNRTYTSEDIQKIIDIIRKYIKS

Specific function: Unknown

COG id: COG1460

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.6

Molecular weight: Translated: 12824; Mature: 12693

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVYIVEEHYIPYSVAKKLLSDVIKSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEELS
CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SIISREDVRAVLASICPITLDEVRSILIMDSNRTYTSEDIQKIIDIIRKYIKS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSVYIVEEHYIPYSVAKKLLSDVIKSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEELS
CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SIISREDVRAVLASICPITLDEVRSILIMDSNRTYTSEDIQKIIDIIRKYIKS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA