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The map label for this gene is 227827461

Identifier: 227827461

GI number: 227827461

Start: 1113867

End: 1114451

Strand: Direct

Name: 227827461

Synonym: M1425_1181

Alternate gene names: NA

Gene position: 1113867-1114451 (Clockwise)

Preceding gene: 227827458

Following gene: 227827462

Centisome position: 42.7

GC content: 35.21

Gene sequence:

>585_bases
ATGAGGCTCTTTATAGGCATAGAAGTACCGCAATCCCCAAAACTGCTTGAAATATTCGAGATAGTAAAAAATACGGGAGC
CGACATAAAATTGGTCGAACCATATAACATTCACATTACACTATTATTCCTAGGCGAAGTTAGGGATGATAGAGTAGAAG
AAGTGAAAGATTCAATGAGTGGGTTAAAATTCAATAAATTTAAAGTTACACTAAAAGGTTTAGGGGCATTTCCAAATTTA
ACAAGACCAAGAGTAGTTTGGGTTGGAATCGTTGAGGGCCAACAACAGCTTAGACAGATTAGATCTTATATACTTAACGA
GCTATTAAAGCGAAAAATTAGACCAGAAGACGATAAGGATTTCTCACCACATTTAACAATAGGCAGGGTAAAAAGCTACA
ACTCCATTAGCAACCTCATAAATACGATTAACGAGAATATGAACGTGGATATTGGAACCTTTGAAGTTAATAATGTTGTT
CTCTTTAAAAGCACGTTAACTCCAAAAGGTCCAATATATGATAAACTGTTTGAAGTGAGTTCAATTGATAGAGGAGGAAG
TACTGAAGATAATAAAACCCACTGA

Upstream 100 bases:

>100_bases
ACAGCTTTGCAAATTCACTTTTTCCAGATCCTGGCATTCCAGTAATTAGAATGACTTTAATTGTGACCACCAAATAACTC
ATTATAGAGGTTTAAAAATT

Downstream 100 bases:

>100_bases
AGAAGACAAAAAAGGAATAGAAAAAGTATTGGAAATCATTAGGGAAAGGTTAAATAAATTAGATTTCGAGGTGGAGGGAT
CATTTAGGAAAGGAACTTGG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRLFIGIEVPQSPKLLEIFEIVKNTGADIKLVEPYNIHITLLFLGEVRDDRVEEVKDSMSGLKFNKFKVTLKGLGAFPNL
TRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVV
LFKSTLTPKGPIYDKLFEVSSIDRGGSTEDNKTH

Sequences:

>Translated_194_residues
MRLFIGIEVPQSPKLLEIFEIVKNTGADIKLVEPYNIHITLLFLGEVRDDRVEEVKDSMSGLKFNKFKVTLKGLGAFPNL
TRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVV
LFKSTLTPKGPIYDKLFEVSSIDRGGSTEDNKTH
>Mature_194_residues
MRLFIGIEVPQSPKLLEIFEIVKNTGADIKLVEPYNIHITLLFLGEVRDDRVEEVKDSMSGLKFNKFKVTLKGLGAFPNL
TRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVV
LFKSTLTPKGPIYDKLFEVSSIDRGGSTEDNKTH

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 22115; Mature: 22115

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFIGIEVPQSPKLLEIFEIVKNTGADIKLVEPYNIHITLLFLGEVRDDRVEEVKDSMS
CEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCCHHHHHHHHHHC
GLKFNKFKVTLKGLGAFPNLTRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKD
CCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVVLFKSTLTPKGPIYDKLFEVS
CCCCEEEECHHCHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHH
SIDRGGSTEDNKTH
CCCCCCCCCCCCCC
>Mature Secondary Structure
MRLFIGIEVPQSPKLLEIFEIVKNTGADIKLVEPYNIHITLLFLGEVRDDRVEEVKDSMS
CEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCCHHHHHHHHHHC
GLKFNKFKVTLKGLGAFPNLTRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKD
CCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVVLFKSTLTPKGPIYDKLFEVS
CCCCEEEECHHCHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHH
SIDRGGSTEDNKTH
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]