Click here to switch to the map view.

The map label for this gene is pqqE [H]

Identifier: 227827329

GI number: 227827329

Start: 991780

End: 992832

Strand: Direct

Name: pqqE [H]

Synonym: M1425_1048

Alternate gene names: 227827329

Gene position: 991780-992832 (Clockwise)

Preceding gene: 227827328

Following gene: 227827330

Centisome position: 38.02

GC content: 37.99

Gene sequence:

>1053_bases
ATGCCCTTTGAAAACGCTCCACATTTAGTCTTCTGGGAAGTAACTAAAGCCTGCCCATTAACTTGTAAACACTGTAGAGC
TAATGCTATAGATAAGCCGTTGCCAAGTGAGCTTAATACTGAAGAGAGTAGAAAATTATTAGAAGATATAGCGAGATTTG
GAAAGGTTGTTATAGTTTTCACCGGTGGTGATCCGTTAAGTAGAAGTGATATTTTTGAACTAATGGAATACGCTAAGTCG
CTAGGATTAGTAGTTTCAATAGCACCCTCTCCTTCTCACCGTTTAGACGATGAGACCATGAAGATGATAAGCAATTATGC
TAGATACATGTCAATTAGCCTAGACGGAGCTACTCCGCAAACTCATGACTGGTTAAGGGGACTTGGTAGTTATAAATACG
CTTTAAGAGGAATAGAGCTTGGATTAAAATACGGGATACAAGTTCAAGTCAATACCCTAGTTTGGAAGAAGAGTTATAGT
GAATTACCTTTCGTAGTCAAATTGCTAAAAGAGATGGGAGTAAAGATTTGGGAAGTGTTCTTTCTAATTCCAGTGGGTAG
AGGAACTACTGAGTTGGATATTCCTAGAGATAAATATAAAGATGTTATAGACTTTCTAGTTGAAGCCACTAGATATGATT
TAGTTGTGAGAACTGTTGAGGCACCTTTCTTTAGGAGAGCTAAACTTGAGTATACTCCAGCTACTACTAACGATAATGAG
CTGGTTTCTACATTACGCGAACTATTAGGTGAACCAGTAAAGGAAGCTGATAAGAGCATTTTGCCTACTAGGGACGGGGC
TGGCGTTATCTTCATAGGTTATAATGGTGATGTCTATCCTAGTGGCTTCTTACCATTGTATTTAGGTAATGTTAAGAAGG
AGAGTTTAGTCGATATTTATAGAAAGTCTGAGGTTTTGAAAAAAATAAAGGATAGTAGGTTTGAAGGGAAATGTGGCATA
TGTAAATACAATAATATTTGTGGGGGGAGTAGGGCTAGGGCTTTTGCAGTATATAATAACCCATTTGCAGAAGACCCAAT
GTGTCCATACTAA

Upstream 100 bases:

>100_bases
GGAAATATTGTGATAAATGTAAATATAAATTGGCGTGTAAAGGAGGAGATAGAGCTAGAGCGTATTATTGGAATGGAGAT
GTTTATGGAGATGACCCATT

Downstream 100 bases:

>100_bases
TACGCTTTTATTTTAAATTATTTTAAACTGAAGATGAGTGTGATTATAAAAATGTTATAAGTATTATAGGTTTAAAAATT
GGATTAAGTATTTCATAATT

Product: radical SAM protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MPFENAPHLVFWEVTKACPLTCKHCRANAIDKPLPSELNTEESRKLLEDIARFGKVVIVFTGGDPLSRSDIFELMEYAKS
LGLVVSIAPSPSHRLDDETMKMISNYARYMSISLDGATPQTHDWLRGLGSYKYALRGIELGLKYGIQVQVNTLVWKKSYS
ELPFVVKLLKEMGVKIWEVFFLIPVGRGTTELDIPRDKYKDVIDFLVEATRYDLVVRTVEAPFFRRAKLEYTPATTNDNE
LVSTLRELLGEPVKEADKSILPTRDGAGVIFIGYNGDVYPSGFLPLYLGNVKKESLVDIYRKSEVLKKIKDSRFEGKCGI
CKYNNICGGSRARAFAVYNNPFAEDPMCPY

Sequences:

>Translated_350_residues
MPFENAPHLVFWEVTKACPLTCKHCRANAIDKPLPSELNTEESRKLLEDIARFGKVVIVFTGGDPLSRSDIFELMEYAKS
LGLVVSIAPSPSHRLDDETMKMISNYARYMSISLDGATPQTHDWLRGLGSYKYALRGIELGLKYGIQVQVNTLVWKKSYS
ELPFVVKLLKEMGVKIWEVFFLIPVGRGTTELDIPRDKYKDVIDFLVEATRYDLVVRTVEAPFFRRAKLEYTPATTNDNE
LVSTLRELLGEPVKEADKSILPTRDGAGVIFIGYNGDVYPSGFLPLYLGNVKKESLVDIYRKSEVLKKIKDSRFEGKCGI
CKYNNICGGSRARAFAVYNNPFAEDPMCPY
>Mature_349_residues
PFENAPHLVFWEVTKACPLTCKHCRANAIDKPLPSELNTEESRKLLEDIARFGKVVIVFTGGDPLSRSDIFELMEYAKSL
GLVVSIAPSPSHRLDDETMKMISNYARYMSISLDGATPQTHDWLRGLGSYKYALRGIELGLKYGIQVQVNTLVWKKSYSE
LPFVVKLLKEMGVKIWEVFFLIPVGRGTTELDIPRDKYKDVIDFLVEATRYDLVVRTVEAPFFRRAKLEYTPATTNDNEL
VSTLRELLGEPVKEADKSILPTRDGAGVIFIGYNGDVYPSGFLPLYLGNVKKESLVDIYRKSEVLKKIKDSRFEGKCGIC
KYNNICGGSRARAFAVYNNPFAEDPMCPY

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 39553; Mature: 39422

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFENAPHLVFWEVTKACPLTCKHCRANAIDKPLPSELNTEESRKLLEDIARFGKVVIVF
CCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEE
TGGDPLSRSDIFELMEYAKSLGLVVSIAPSPSHRLDDETMKMISNYARYMSISLDGATPQ
ECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCC
THDWLRGLGSYKYALRGIELGLKYGIQVQVNTLVWKKSYSELPFVVKLLKEMGVKIWEVF
HHHHHHHCCHHHHHHHHHHHHEEECEEEEEEEEEEECCCCCCHHHHHHHHHHCHHHEEEE
FLIPVGRGTTELDIPRDKYKDVIDFLVEATRYDLVVRTVEAPFFRRAKLEYTPATTNDNE
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHCEEEECCCCCCHHH
LVSTLRELLGEPVKEADKSILPTRDGAGVIFIGYNGDVYPSGFLPLYLGNVKKESLVDIY
HHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCCCHHHHHHHH
RKSEVLKKIKDSRFEGKCGICKYNNICGGSRARAFAVYNNPFAEDPMCPY
HHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
PFENAPHLVFWEVTKACPLTCKHCRANAIDKPLPSELNTEESRKLLEDIARFGKVVIVF
CCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEE
TGGDPLSRSDIFELMEYAKSLGLVVSIAPSPSHRLDDETMKMISNYARYMSISLDGATPQ
ECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCC
THDWLRGLGSYKYALRGIELGLKYGIQVQVNTLVWKKSYSELPFVVKLLKEMGVKIWEVF
HHHHHHHCCHHHHHHHHHHHHEEECEEEEEEEEEEECCCCCCHHHHHHHHHHCHHHEEEE
FLIPVGRGTTELDIPRDKYKDVIDFLVEATRYDLVVRTVEAPFFRRAKLEYTPATTNDNE
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHCEEEECCCCCCHHH
LVSTLRELLGEPVKEADKSILPTRDGAGVIFIGYNGDVYPSGFLPLYLGNVKKESLVDIY
HHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCCCHHHHHHHH
RKSEVLKKIKDSRFEGKCGICKYNNICGGSRARAFAVYNNPFAEDPMCPY
HHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA