Definition Sinorhizobium fredii NGR234 chromosome, complete genome.
Accession NC_012587
Length 3,925,702

Click here to switch to the map view.

The map label for this gene is topA

Identifier: 227821655

GI number:

Start: 1150828

End: 1153500

Strand: Reverse

Name: topA

Synonym: NGR_c10860

Alternate gene names: NA

Gene position: NA

Preceding gene: 227821656

Following gene: 227821654

Centisome position: NA

GC content: NA

Gene sequence:

>2673_bases
ATGAATGTTGTAGTGGTGGAATCGCCTTCCAAGGCCAAGACGATCAACAAGTATCTGGGCCCCGGCTACAAGGTGCTTGC
TTCGTTCGGCCATGTGCGGGATCTGCCGGCCAAGGACGGATCGGTTCGCCCGGACGAAGACTTCGAAATGTCGTGGGAAG
TCGACGGCGCCTCCGCCAAGCGGATGAAGGACATTGCCGACGCCGTGAAGTCGTCGGACGGACTGATCCTGGCAACCGAC
CCGGACCGGGAAGGTGAAGCGATCTCCTGGCATGTGCTCGACCTCCTCAAGAAAAAGAAGGTCATCGGCGACAAGCCGGT
CAAGCGCGTCGTCTTCAATGCGATCACCAAGAAGGCCGTGCTCGATGCGATGGCCGATCCGCGCGACATCGACATTTCGC
TCGTCGACGCCTATCTCGCCCGCCGCGCGCTCGACTACCTCGTCGGCTTCAACCTTTCGCCGGTTCTGTGGCGCAAGCTG
CCTGGCGCCCGTTCGGCCGGTCGCGTCCAATCGGTGGCGCTGCGGCTCGTCTGCGATCGCGAGGCCGAGATCGAACGCTT
CGTCACGGAAGAATACTGGAATATCTCGGCGCTCCTGAAGACACCGCGCGGCGACGAGTTCGAAGCGCGGCTCGTCTCGG
CCGACGGCAAGCGGCTGCAGCCGAAAGCGGTTGGCAACGGCGAGGAGGCCAATCGGCTGAAGGCCCTGCTCGACGGCGCG
AGCTATGTGGTCGAAAGCGTCGAGGCGAAGCCCGTCAAGCGAAACCCGGGTCCGCCCTTCACAACCTCGACGCTGCAGCA
GGCCGCCTCCTCCAAGCTCGGTTTCTCGGCGTCGCGCACCATGCAGGTGGCACAGAAGCTCTACGAGGGCGTCGATGTCG
GCGGCGAGACCGTCGGTCTGATCACTTATATGCGTACGGACGGCGTACAGATGGCGCCGGAAGCGATCGATGCGGCGCGC
CGGGCGATCGGCAGCCAGTTCGGCACCCGCTACCTGCCGGAAAAGCCGCGCTTCTATTCGACCAAGGCGAAGAACGCCCA
GGAAGCCCACGAAGCGATCCGCCCGACGGACTTCAACCGCACCCCCGATGAGGTGCGCCGCTTCCTCGACGGCGACATGC
TGAAGCTCTACGACCTGATCTGGAAGCGCGGCATCGCCAGCCAGATGGCATCGGCCGAGATCGAGCGGACGACGGCGGAG
ATCGCCGCCGACAACGGCGGCAAGAAGGCCGGCCTGCGCGCCACCGGCTCCGTCATCCGCTTCGACGGCTTCATCGCCGC
CTATACCGACATGAAGGAAGACGGCGAGCAGGCGGACGACGGCGATGAGAGCGGCCGGCTGCCCGAGATCAATGCGCGCG
AAAATCTCGCCAAGCAGAAGATCAACGCCACCCAGCACTTCACCGAGCCGCCGCCGCGCTATTCGGAAGCGACGCTGATC
AAGAAGATGGAAGAGCTCGGCATCGGGCGCCCCTCGACCTATGCCGCGACGATCAGCACGCTCGTCGACCGCGACTATGT
GGAGATCGACAAGCGCAAGTTGATGCCGCAGGCCAAGGGCCGGCTGGTGACGGCGTTCCTCGAGAGCTTCTTCACCCGCT
ATGTCGAATACGATTTCACCGCATCTCTCGAGGAAAAGCTCGACCAGATCTCGGCCGGCGAGCTCAATTGGAAGGACGTC
CTGCGCGAGTTCTGGAAGGATTTCTTCTCGCAGATCGAGGACACCAAGGAACTGCGCGTCACCAATGTGCTCGATGCGCT
CAACGAGGAGCTTGCACCGCTCGTCTTCCCGAAACGCGAGGACGGCGGCGACCCGCGCACCTGCCAGGTCTGCGGCACCG
GCAAGCTCTCGCTGAAGCTGGGCAAATACGGCGCCTTCGTCGGCTGCTCGAACTATCCGGAATGCAACTACACGCGCCAG
CTGTCGTCCGACAGCAACGGCGATGCGGAAGCGGCCGTGTCGAACGAGCCGCAGAGCCTCGGCAAGGATCCGCACACCGG
CGAGGAAATCACCCTGCGCAGCGGTCGCTTCGGTCCCTATGTCCAGCGGGGCGACGGCAAGGACGCCAAGCGCGCGAGCC
TGCCGAAGGGCTGGACGCCGGCGACGATCGACCACGAGAAGGCGCTCGCTCTTCTCTCGCTGCCGCGCGACATCGGCAAG
CACCCGGAAACCGGCAAGATGATCTCGACCGGGATTGGCCGCTACGGACCGTTCGTGCTGCATGACGGCACCTATGCCAA
TCTGGAATCGGTGGAGGACGTCTTTTCGATCGGCCTCAATCGCGCCGTTTCGGCTCTTGCCGACAAGCAGTCGAAGGGTG
CAGGCGGCGGGCGCACCGCGGCTGCCGCCCTCAAGGAACTCGGGGAACATCCCGACGGCGGCGTGATGACTGTGCGCGAC
GGGCGCTTCGGCCCCTATGTCAACTGGGGCAAGGTGAACGCCACCCTGCCGAAGGGCAAGGATCCGCAGTCCGTGACCGT
CGAAGAGGCGCTGGCACTGATCGCCGAACGTGCGGCGAAAGGTGGCGTGTCGAAGGGCAAGGCGGGCAATGGCAAGGCGG
CCAGGGGCAGATCCTCGACCGCGGCAACCAAGAGCACGGCGGCGAAAGCCGAGAAGCCCAAGGCGGCCGCAAAGGCGAAG
AGCAAGACGGCCGCGAAGGCCAAGAAGGGCTGA

Upstream 100 bases:

>100_bases
AACCCCTTGACCGCGCCCGAATCCCTGTCCATTTCGTGGCCACAACAAAGGCCGCGCAACGCCTGCGCCTTGCCAGAAGA
GATTGTCTCAGAGAATGACG

Downstream 100 bases:

>100_bases
CGTTGAGTAGAATTCCGCGCGATCCGACCGAACGGCGCACAAAAAGTGCCGGCAAGAAGCAGTTGCGCGCAGCCCAGGCG
GCGCCCGCAGTCAAGGACGC

Product: DNA topoisomerase I

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>890_residues
MNVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAKRMKDIADAVKSSDGLILATD
PDREGEAISWHVLDLLKKKKVIGDKPVKRVVFNAITKKAVLDAMADPRDIDISLVDAYLARRALDYLVGFNLSPVLWRKL
PGARSAGRVQSVALRLVCDREAEIERFVTEEYWNISALLKTPRGDEFEARLVSADGKRLQPKAVGNGEEANRLKALLDGA
SYVVESVEAKPVKRNPGPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDVGGETVGLITYMRTDGVQMAPEAIDAAR
RAIGSQFGTRYLPEKPRFYSTKAKNAQEAHEAIRPTDFNRTPDEVRRFLDGDMLKLYDLIWKRGIASQMASAEIERTTAE
IAADNGGKKAGLRATGSVIRFDGFIAAYTDMKEDGEQADDGDESGRLPEINARENLAKQKINATQHFTEPPPRYSEATLI
KKMEELGIGRPSTYAATISTLVDRDYVEIDKRKLMPQAKGRLVTAFLESFFTRYVEYDFTASLEEKLDQISAGELNWKDV
LREFWKDFFSQIEDTKELRVTNVLDALNEELAPLVFPKREDGGDPRTCQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQ
LSSDSNGDAEAAVSNEPQSLGKDPHTGEEITLRSGRFGPYVQRGDGKDAKRASLPKGWTPATIDHEKALALLSLPRDIGK
HPETGKMISTGIGRYGPFVLHDGTYANLESVEDVFSIGLNRAVSALADKQSKGAGGGRTAAAALKELGEHPDGGVMTVRD
GRFGPYVNWGKVNATLPKGKDPQSVTVEEALALIAERAAKGGVSKGKAGNGKAARGRSSTAATKSTAAKAEKPKAAAKAK
SKTAAKAKKG

Sequences:
NA

Specific function: NA

COG id: COG0550

COG function: function code L; Topoisomerase IA

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA