Click here to switch to the map view.

The map label for this gene is yvcD [H]

Identifier: 227817917

GI number: 227817917

Start: 4880874

End: 4882385

Strand: Reverse

Name: yvcD [H]

Synonym: BAMEG_5441

Alternate gene names: 227817917

Gene position: 4882385-4880874 (Counterclockwise)

Preceding gene: 227817918

Following gene: 227817916

Centisome position: 93.35

GC content: 36.44

Gene sequence:

>1512_bases
ATGGGGGAAAATCAAAGAATATATAAGGAGAACGGACAAGTTATCTCTTTTAATCAATTAGCGGACTTCTTTTATAAAAA
AGGGATGAGGGCTTACAAAGGGCAAAAATTGCAAGATGCAATTAAATATTTTCGAAGAGCGGCACAAAGTGAGAAGGAGC
CGTTTATTTTATGTCAATTAGCAACAGTATTATCTGAGGCTGGTGAATACCAAGAGTCGAATCAAACCTTCTTTAAGCTT
GTTAGATCTAATCCAGAACTTGAACAGTGTTATTATTTTATTGCAAATAATTATGCATATATGGGACTATTCCAGCAGGC
GAAGAAATATGCGGATCGCTATTTAGAAGTTGCAGAAGAGAAGGAATTTGTTGAAGATACATTAGAATTACTTGAAATTA
TGGAAGAAGAAGCGATGGGTGCGGAAGAGATCGAAGATGAAGATGATTTAATTGTTATGCAGGAAGAAGCGAATCGTTAT
ATTCGTAACGGACAATTGGAAGAAGCAATTGCTACATTAGAAATTGTTACGAAAGATTATCCGGAATTTTGGTCGGGGCA
TAATAATTTAGCCATTGCGCATTTTCAATCTGGCAATGTAGATAAGGCACTGAAATTAACGGAAATGATTTTAGATAAAA
ATCCAGGGAATATACATGCGCTTTGTAATACGCTTATTTTTCTATATTCAATTGGAGAGCATAAACAAGTAGAAGTATTA
GCTGCTCAGTTAGTTGCAGTATATCCAATTTCATTTGAACATCGTTTGAAACTTGGAACGACACTTGCAACAATTGGTCA
TTTTGAGCATGCGTATAAATGGTTTAAAGTATTAAAACGTCAAGGATACGAAGGAGACGTTAGTTTTTATTATTGGTTTG
CATATTCCGCTTATATGGTGAAAGATCAGCAAGTAGCTGAAAAAATGTGGCAACATGTTGTAGAATTGCACCCTGATAAA
AAGGGAAAAGAACCGTGGAATGCACTGAATTTAGCCGATGAAGGACAAAACGTGTTATTTGAAGAATTACGAAAATCATT
TCAGCAAAGTGCAACGCTAGAGGAACAAATGCTAGCTTTATATTTAATGAATGAATTATCAACGCCGGAGAAGGTGGGAT
TCTTCTTTGATGTAACGCAGGCAAAGAATGGTGTTCCAATCGTATCGCAACTTGCAAAGTATTTCTTTTTACTGAATAGT
CATAAGAGCATCCCAGCTGATTTACAGCAATTTGAACAGTGCGCACGGATCGCGGATGCTTTATACAATTATACGCAAAA
AGATGATGAATTAATCGAAGAGTGTTTACAATTTTGGTTTTGTACGTTTATACGTTTATATACATCTGGGGCAGTTTTTA
CAAATGTATACGGCTGGTCAGCTGCGGTGGAATATATCGTACGCAGCGAACAAGGAAATAAGATGACACAGTCAGAGCTC
GGAGATGTATATAATGTATCTGTAGCGACTGTTCGAAAGTATGTGCAAGCTGTTAAGCGTACGCACACATAA

Upstream 100 bases:

>100_bases
AAATAATTGAGTATAATATACTGTTTTGTTTTTTACGGAATCGTTTATACTTATAGATAGAAGAATGTGTGAACGAAGAA
AACAAAAAACTGGAGGATAT

Downstream 100 bases:

>100_bases
GTAAGCAAATCATTGGGAAAAAAATGATGCGAACAGTATAATGAGGGTAACTTAATTGTGTAGGAATGAATAGGAGTGAA
TAGTGTGTCAGAAGAAAAAA

Product: TPR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MGENQRIYKENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKEPFILCQLATVLSEAGEYQESNQTFFKL
VRSNPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAEEKEFVEDTLELLEIMEEEAMGAEEIEDEDDLIVMQEEANRY
IRNGQLEEAIATLEIVTKDYPEFWSGHNNLAIAHFQSGNVDKALKLTEMILDKNPGNIHALCNTLIFLYSIGEHKQVEVL
AAQLVAVYPISFEHRLKLGTTLATIGHFEHAYKWFKVLKRQGYEGDVSFYYWFAYSAYMVKDQQVAEKMWQHVVELHPDK
KGKEPWNALNLADEGQNVLFEELRKSFQQSATLEEQMLALYLMNELSTPEKVGFFFDVTQAKNGVPIVSQLAKYFFLLNS
HKSIPADLQQFEQCARIADALYNYTQKDDELIEECLQFWFCTFIRLYTSGAVFTNVYGWSAAVEYIVRSEQGNKMTQSEL
GDVYNVSVATVRKYVQAVKRTHT

Sequences:

>Translated_503_residues
MGENQRIYKENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKEPFILCQLATVLSEAGEYQESNQTFFKL
VRSNPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAEEKEFVEDTLELLEIMEEEAMGAEEIEDEDDLIVMQEEANRY
IRNGQLEEAIATLEIVTKDYPEFWSGHNNLAIAHFQSGNVDKALKLTEMILDKNPGNIHALCNTLIFLYSIGEHKQVEVL
AAQLVAVYPISFEHRLKLGTTLATIGHFEHAYKWFKVLKRQGYEGDVSFYYWFAYSAYMVKDQQVAEKMWQHVVELHPDK
KGKEPWNALNLADEGQNVLFEELRKSFQQSATLEEQMLALYLMNELSTPEKVGFFFDVTQAKNGVPIVSQLAKYFFLLNS
HKSIPADLQQFEQCARIADALYNYTQKDDELIEECLQFWFCTFIRLYTSGAVFTNVYGWSAAVEYIVRSEQGNKMTQSEL
GDVYNVSVATVRKYVQAVKRTHT
>Mature_502_residues
GENQRIYKENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKEPFILCQLATVLSEAGEYQESNQTFFKLV
RSNPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAEEKEFVEDTLELLEIMEEEAMGAEEIEDEDDLIVMQEEANRYI
RNGQLEEAIATLEIVTKDYPEFWSGHNNLAIAHFQSGNVDKALKLTEMILDKNPGNIHALCNTLIFLYSIGEHKQVEVLA
AQLVAVYPISFEHRLKLGTTLATIGHFEHAYKWFKVLKRQGYEGDVSFYYWFAYSAYMVKDQQVAEKMWQHVVELHPDKK
GKEPWNALNLADEGQNVLFEELRKSFQQSATLEEQMLALYLMNELSTPEKVGFFFDVTQAKNGVPIVSQLAKYFFLLNSH
KSIPADLQQFEQCARIADALYNYTQKDDELIEECLQFWFCTFIRLYTSGAVFTNVYGWSAAVEYIVRSEQGNKMTQSELG
DVYNVSVATVRKYVQAVKRTHT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58357; Mature: 58226

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGENQRIYKENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKEPFILCQL
CCCCCCEECCCCCEEEHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH
ATVLSEAGEYQESNQTFFKLVRSNPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAEE
HHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KEFVEDTLELLEIMEEEAMGAEEIEDEDDLIVMQEEANRYIRNGQLEEAIATLEIVTKDY
HHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCC
PEFWSGHNNLAIAHFQSGNVDKALKLTEMILDKNPGNIHALCNTLIFLYSIGEHKQVEVL
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
AAQLVAVYPISFEHRLKLGTTLATIGHFEHAYKWFKVLKRQGYEGDVSFYYWFAYSAYMV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHH
KDQQVAEKMWQHVVELHPDKKGKEPWNALNLADEGQNVLFEELRKSFQQSATLEEQMLAL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
YLMNELSTPEKVGFFFDVTQAKNGVPIVSQLAKYFFLLNSHKSIPADLQQFEQCARIADA
HHHHHCCCCHHHCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LYNYTQKDDELIEECLQFWFCTFIRLYTSGAVFTNVYGWSAAVEYIVRSEQGNKMTQSEL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
GDVYNVSVATVRKYVQAVKRTHT
CCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GENQRIYKENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKEPFILCQL
CCCCCEECCCCCEEEHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH
ATVLSEAGEYQESNQTFFKLVRSNPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAEE
HHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KEFVEDTLELLEIMEEEAMGAEEIEDEDDLIVMQEEANRYIRNGQLEEAIATLEIVTKDY
HHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCC
PEFWSGHNNLAIAHFQSGNVDKALKLTEMILDKNPGNIHALCNTLIFLYSIGEHKQVEVL
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
AAQLVAVYPISFEHRLKLGTTLATIGHFEHAYKWFKVLKRQGYEGDVSFYYWFAYSAYMV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHH
KDQQVAEKMWQHVVELHPDKKGKEPWNALNLADEGQNVLFEELRKSFQQSATLEEQMLAL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
YLMNELSTPEKVGFFFDVTQAKNGVPIVSQLAKYFFLLNSHKSIPADLQQFEQCARIADA
HHHHHCCCCHHHCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LYNYTQKDDELIEECLQFWFCTFIRLYTSGAVFTNVYGWSAAVEYIVRSEQGNKMTQSEL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
GDVYNVSVATVRKYVQAVKRTHT
CCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]