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The map label for this gene is yoaA [H]

Identifier: 227082117

GI number: 227082117

Start: 2078445

End: 2080385

Strand: Reverse

Name: yoaA [H]

Synonym: VCM66_1914

Alternate gene names: 227082117

Gene position: 2080385-2078445 (Counterclockwise)

Preceding gene: 227082120

Following gene: 227082116

Centisome position: 71.92

GC content: 51.57

Gene sequence:

>1941_bases
ATGATTGAAAAAACCTTTTCCCAGCAAGGCGCTTTAGGCCAAGCCATTCCGGGCTTTCAACCCAGACAAGCACAAGTCGA
TATGGCGAAAGCGGTCGCCAGTGCTATCGCCAACCAATCTCAATTAGTGGTTGAAGCGGGTACCGGAACCGGCAAAACCT
TCGCGTATTTAGTGCCTGCGCTGCTCAGTGGCAAAAAGGTGATCATCAGTACCGGTTCTAAAAACCTGCAAGAGCAGCTT
TTCCATCGCGATTTGCCTTTAATGGTCAGTGCGTTAGGCTTTTTCGGCCAAGTCGCTCTGCTCAAAGGGCGTGCAAACTA
TCTCTGTCTTGACCGCCTAAGTCGGCAAATGGTCGAAAGCCATACCCCCGAATCTGATCCCACGCTGCTCACTCAACTGG
TGAAAGTACGCAGCTGGGCATCCAGTACCCAGAGCGGCGATTTAGGTGAATGTGATGATTTGGCGGAAGATAGCCCGATC
ATCCCAACCATTACTTCAACCAACGACAACTGCTTAGGGAAAGAGTGTGCCAGCTACCAAGACTGCTTTGTTTCCAAAGC
GCGTCGTCGCGCGATGGATGCCGATGTGGTCGTGGTGAACCATCACCTATTTCTGGCCGATTTGGCGATCAAAGAGACGG
GCTTTGGTGAGTTAATTCCTGAAGCCGAAGTGTTTATTTTCGATGAAGCGCACCAACTGCCGGATATCGCGAGCCAATAT
TTTGGTCAGTCGGTATCGAGTCGCCAAGTGCAAGATCTGGCGAAAGATATTGAACTCGGTTATCGCACCGAAGCGAAAGA
CATGCGCCAGCTACAAAAAGTGTCGGATAAGCTAGTGCAGGCTGCGATGGATTTGCGCATTGTGCTTGGCGAGCCGGGCT
ATCGTGGCAACTGGCGTGAAGTGCTGAAAGTGCCGACCGTCGCAAGGGAAGTGGAACGGCTCAATGAAGCGCTGCAATTT
GCGTTGGATGTGCTCAAGCTGGCTTTGGGGCGCAGTCAGCTTCTGGATACGGCATTTGAACGTGCAACTTTGATCTTAGG
CCGCATTCGCCGTGTGTGTGATGTTTCTGTCACTGGATATTCCTATTGGTATGACACCACGCCGCGCCATTTCAGTTTGC
ATATTACCCCACTGTCGGTAGCAGATAAATTTCGTGAACAGATTGCGCTAAAAGAGGGCGCGTGGATATTCACTTCCGCC
ACCTTAGCGGTCAACGAAGATTTCAGCCATTTTACTGAGCGGCTAGGGCTGACGCCGAGTGCGCAGTTTTCGCTGGTCAG
CCCATTTGATTATCAGCAGCAAGCGGTCTTGTGCGTGCCGCGCTATTTACCCGAGCCGAACAGTCCCGGCCTTGCTGAGA
AACTGGTACGCATGCTCGCGCCAGTGATCGAACATAACCAAGGGCGCTGTTTCTTTTTATGTACCTCGCACAGCATGATG
CGCGATCTAGGCGAGCGTTTTCGTGAACGTTTGACCTTGCCAGTGTTGATGCAAGGAGAAACCAGTAAGCAGAAAACGTT
GGCTGAATTTATGGAGCTGGGCAATGCCCTGTTGGTCGCAACTGGTGCTTTCTGGGAAGGGATCGATGTGCGAGGCGACA
CTTTAAGCTGTGTTATCATCGACAAATTGCCGTTTACTGCACCGGATGACCCGTTGCTCAAAGCGCGGATTGAAGATTGT
CGTTTGCGCGGTGGCGATCCATTTGCGCAGGTGCAACTTCCCGAAGCGGTGATCACCTTAAAGCAAGGTGTGGGGCGGCT
GATCCGCGATAAAAATGATAAAGGCGCGTTGATCATCTGTGACAATCGATTGGTCACGCGCGATTATGGTGGCGTGTTTC
TCGCCAGTTTACCGCCAATCCCACGCACGCGGGATCTGGACGTCGTCACCACTTTTCTACAACAATTAGCTATAACTGAA
ATCAATCAGAGAGACTCATGA

Upstream 100 bases:

>100_bases
CGCAAGTAAATCTTTCTCTGCGGTGTGAATGAGATTGTCATTCGCACCGCTGCTGAAAACCTGCCATAATCGCGCCATTT
CCGTTGCACAACGAACTGGC

Downstream 100 bases:

>100_bases
GCGTAAAAATTCTCGCCTTAGATACGGCCACCGAGCGCTGTTCCGTCGCGCTACTCGTCGGCAATACCGTTTATTCACGC
AGTGAAATCGCCCCGCGTGA

Product: ATP-dependent helicase, DinG family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 646

Protein sequence:

>646_residues
MIEKTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPALLSGKKVIISTGSKNLQEQL
FHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTPESDPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSPI
IPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQY
FGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWREVLKVPTVAREVERLNEALQF
ALDVLKLALGRSQLLDTAFERATLILGRIRRVCDVSVTGYSYWYDTTPRHFSLHITPLSVADKFREQIALKEGAWIFTSA
TLAVNEDFSHFTERLGLTPSAQFSLVSPFDYQQQAVLCVPRYLPEPNSPGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMM
RDLGERFRERLTLPVLMQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAPDDPLLKARIEDC
RLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRDYGGVFLASLPPIPRTRDLDVVTTFLQQLAITE
INQRDS

Sequences:

>Translated_646_residues
MIEKTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPALLSGKKVIISTGSKNLQEQL
FHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTPESDPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSPI
IPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQY
FGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWREVLKVPTVAREVERLNEALQF
ALDVLKLALGRSQLLDTAFERATLILGRIRRVCDVSVTGYSYWYDTTPRHFSLHITPLSVADKFREQIALKEGAWIFTSA
TLAVNEDFSHFTERLGLTPSAQFSLVSPFDYQQQAVLCVPRYLPEPNSPGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMM
RDLGERFRERLTLPVLMQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAPDDPLLKARIEDC
RLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRDYGGVFLASLPPIPRTRDLDVVTTFLQQLAITE
INQRDS
>Mature_646_residues
MIEKTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPALLSGKKVIISTGSKNLQEQL
FHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTPESDPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSPI
IPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQY
FGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWREVLKVPTVAREVERLNEALQF
ALDVLKLALGRSQLLDTAFERATLILGRIRRVCDVSVTGYSYWYDTTPRHFSLHITPLSVADKFREQIALKEGAWIFTSA
TLAVNEDFSHFTERLGLTPSAQFSLVSPFDYQQQAVLCVPRYLPEPNSPGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMM
RDLGERFRERLTLPVLMQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAPDDPLLKARIEDC
RLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRDYGGVFLASLPPIPRTRDLDVVTTFLQQLAITE
INQRDS

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=628, Percent_Identity=64.171974522293, Blast_Score=840, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=245, Percent_Identity=28.9795918367347, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 71696; Mature: 71696

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
LLSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVES
HHCCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
HTPESDPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSPIIPTITSTNDNCLGKECASYQ
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHH
DCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQY
HHHHHHHHHHCCCCCEEEEECEEEEHHHHHHCCCCCCCCCCCEEEEEECHHCCHHHHHHH
FGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWRE
HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHH
VLKVPTVAREVERLNEALQFALDVLKLALGRSQLLDTAFERATLILGRIRRVCDVSVTGY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEECCE
SYWYDTTPRHFSLHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPS
EEEECCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHHHCCCCC
AQFSLVSPFDYQQQAVLCVPRYLPEPNSPGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMM
CCEEEECCCCCCCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
RDLGERFRERLTLPVLMQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDTLSCVII
HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIIC
ECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
DNRLVTRDYGGVFLASLPPIPRTRDLDVVTTFLQQLAITEINQRDS
CCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIEKTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
LLSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVES
HHCCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
HTPESDPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSPIIPTITSTNDNCLGKECASYQ
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHH
DCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQY
HHHHHHHHHHCCCCCEEEEECEEEEHHHHHHCCCCCCCCCCCEEEEEECHHCCHHHHHHH
FGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWRE
HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHH
VLKVPTVAREVERLNEALQFALDVLKLALGRSQLLDTAFERATLILGRIRRVCDVSVTGY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEECCE
SYWYDTTPRHFSLHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPS
EEEECCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHHHCCCCC
AQFSLVSPFDYQQQAVLCVPRYLPEPNSPGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMM
CCEEEECCCCCCCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
RDLGERFRERLTLPVLMQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDTLSCVII
HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIIC
ECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
DNRLVTRDYGGVFLASLPPIPRTRDLDVVTTFLQQLAITEINQRDS
CCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]