Click here to switch to the map view.

The map label for this gene is csgA [H]

Identifier: 227081944

GI number: 227081944

Start: 1892561

End: 1893268

Strand: Direct

Name: csgA [H]

Synonym: VCM66_1738

Alternate gene names: 227081944

Gene position: 1892561-1893268 (Clockwise)

Preceding gene: 227081943

Following gene: 227081948

Centisome position: 65.43

GC content: 52.82

Gene sequence:

>708_bases
ATGAATATCGTGATCATCGGTGGCAGCGGCGGTATTGGTTTGGCGATGGTGCAAGAAGCGCTGAACCGTTTTAGTGAGGC
CAACGTGCATGCGACTTACCATAGTACTACGCCGACGTGGCAGCACCCGCGGCTGACTTGGCACGCACTCGATGCCACCC
AAGAAGCGCAGGTACAAGCTCTGAGTGAGCAATTTAGCCAAGTCGATTGGCTTATCAACTGTGTCGGCGTACTGCATACA
GCAAGTAAAGGACCAGAAAAGAACCTCAATGCCTTAGATGCGGATTTTTTCCTCTACAACCTGATCCACAATGCCTTGCC
TAGCCTACTGCTTGCCAAGCATTTCACCGCCAAACTGAAGCAGAGTGAGGCGGCCAAGTTTGCCACGCTTTCCGCCAAGG
TCGGCAGTATTTGTGATAACCAACTCGGCGGTTGGTACAGCTATCGAGCATCGAAAGCGGCGCTCAATATGCTGCTGAAA
ACGTTAGCGATTGAATGGCAACGCTCACTGAAAAAAGGGGTGGTGTTGGCACTGCATCCCGGCACGACCGACACCAAACT
CTCAGCGCCGTTTCACAGCAATGTTGCCCCAGATAAACTGTTCAGCCCCGCCCGTGTTGCGCACGATTTGATTGGTTTGA
TTGCAGCGGCAACGCCTGAACAAAGCGGCGGATTTTATGCCTACGATGGTCAGACGCTGCCTTGGTAA

Upstream 100 bases:

>100_bases
TCGAAAATTTGGCGCTCGACAGTGTCGATATGGTTGACTGGCCAATCGCCGCCAGCGCGTATCTTCTTATCCATCATCCT
CAAAATAAGGAAAGCTCATC

Downstream 100 bases:

>100_bases
AGCGTAGGGATTAGCTAAAGGTGGATAGATACAGCGCCTCAACCTTATCGCGCGCCCATTGAGTTTTACGCAAAAACTTG
AGCGATGATTTAATCGATGG

Product: C factor cell-cell signaling protein

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNIVIIGGSGGIGLAMVQEALNRFSEANVHATYHSTTPTWQHPRLTWHALDATQEAQVQALSEQFSQVDWLINCVGVLHT
ASKGPEKNLNALDADFFLYNLIHNALPSLLLAKHFTAKLKQSEAAKFATLSAKVGSICDNQLGGWYSYRASKAALNMLLK
TLAIEWQRSLKKGVVLALHPGTTDTKLSAPFHSNVAPDKLFSPARVAHDLIGLIAAATPEQSGGFYAYDGQTLPW

Sequences:

>Translated_235_residues
MNIVIIGGSGGIGLAMVQEALNRFSEANVHATYHSTTPTWQHPRLTWHALDATQEAQVQALSEQFSQVDWLINCVGVLHT
ASKGPEKNLNALDADFFLYNLIHNALPSLLLAKHFTAKLKQSEAAKFATLSAKVGSICDNQLGGWYSYRASKAALNMLLK
TLAIEWQRSLKKGVVLALHPGTTDTKLSAPFHSNVAPDKLFSPARVAHDLIGLIAAATPEQSGGFYAYDGQTLPW
>Mature_235_residues
MNIVIIGGSGGIGLAMVQEALNRFSEANVHATYHSTTPTWQHPRLTWHALDATQEAQVQALSEQFSQVDWLINCVGVLHT
ASKGPEKNLNALDADFFLYNLIHNALPSLLLAKHFTAKLKQSEAAKFATLSAKVGSICDNQLGGWYSYRASKAALNMLLK
TLAIEWQRSLKKGVVLALHPGTTDTKLSAPFHSNVAPDKLFSPARVAHDLIGLIAAATPEQSGGFYAYDGQTLPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25519; Mature: 25519

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVIIGGSGGIGLAMVQEALNRFSEANVHATYHSTTPTWQHPRLTWHALDATQEAQVQA
CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHH
LSEQFSQVDWLINCVGVLHTASKGPEKNLNALDADFFLYNLIHNALPSLLLAKHFTAKLK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSEAAKFATLSAKVGSICDNQLGGWYSYRASKAALNMLLKTLAIEWQRSLKKGVVLALHP
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
GTTDTKLSAPFHSNVAPDKLFSPARVAHDLIGLIAAATPEQSGGFYAYDGQTLPW
CCCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MNIVIIGGSGGIGLAMVQEALNRFSEANVHATYHSTTPTWQHPRLTWHALDATQEAQVQA
CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHH
LSEQFSQVDWLINCVGVLHTASKGPEKNLNALDADFFLYNLIHNALPSLLLAKHFTAKLK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSEAAKFATLSAKVGSICDNQLGGWYSYRASKAALNMLLKTLAIEWQRSLKKGVVLALHP
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
GTTDTKLSAPFHSNVAPDKLFSPARVAHDLIGLIAAATPEQSGGFYAYDGQTLPW
CCCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]