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The map label for this gene is ydjX [C]

Identifier: 227081872

GI number: 227081872

Start: 1808966

End: 1809655

Strand: Direct

Name: ydjX [C]

Synonym: VCM66_1663

Alternate gene names: 227081872

Gene position: 1808966-1809655 (Clockwise)

Preceding gene: 227081871

Following gene: 227081873

Centisome position: 62.54

GC content: 47.25

Gene sequence:

>690_bases
ATGTATAAAAAACTCATCATCGCCATTGTTTTGATTGCCATTGCCGCGCTCTTGGTGACGCAGTTTAGCCAATACCTCAC
ACTGGATGTTGCGAAAGCCAAACAAGCCGAATTAGCGAATTATATTGATGCCCATTTGCTGCAAGCCGCACTGATCTATT
TTGTGGTGTATGTTCTCCTAACCGCATTTTCAATCCCCGGCGCAACGGTCGTGACTTTGTTGGGAGCGGCCCTATTTGGC
TTTTGGTTGAGCTTACTGCTGGCTTCTTTTGCCAGTACCATTGGTGCCACTCTCGCCTTTCTCAGTAGCCGCTTCTTATT
GCGAGATTGGGTGCAAGCTAAATTCGCTGATAAATTGCAAACCATCAATCAAGGTATTGAACGAGATGGCGCGTTTTATT
TACTCTCTCTGCGACTGATCCCGATTTTTCCATTTTTCCTGATTAACTTAGTGATGGGGCTAACGCCTATCTCCACTTGG
CGTTACTACTGGGTCAGCCAACTTGGTATGCTGCCGGGTACGGCGGTGTATCTCAATGCGGGTACTCAACTGGCGGAAAT
CTCAAGCCTAGGCGAAATTGTGTCGCTCCCTGTGCTCGCTTCATTCGTTTTGTTAGGCGTATTTCCGATAGTGGTGAAAT
GGCTCATGGGTAAATTTCAACAGCGTGCCACTCAATCGCCAGTGAAGTAA

Upstream 100 bases:

>100_bases
CTATGATTGGGTGAAGAAACGTAGCCCACACCGCTGAAGAGCCAAGTAAAACGGGCAATATCACGCCCCACAAACCATAA
AGTAATGACTAGGTACTCGA

Downstream 100 bases:

>100_bases
GTCACTCTTGGTAAAAGTAAGCTAGGAAGGACAATGAAAATCTACACGGCCACTCATCCGCTTGAAGCGCACATGCTGAT
GCAGCTTTTGCATCAGCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MYKKLIIAIVLIAIAALLVTQFSQYLTLDVAKAKQAELANYIDAHLLQAALIYFVVYVLLTAFSIPGATVVTLLGAALFG
FWLSLLLASFASTIGATLAFLSSRFLLRDWVQAKFADKLQTINQGIERDGAFYLLSLRLIPIFPFFLINLVMGLTPISTW
RYYWVSQLGMLPGTAVYLNAGTQLAEISSLGEIVSLPVLASFVLLGVFPIVVKWLMGKFQQRATQSPVK

Sequences:

>Translated_229_residues
MYKKLIIAIVLIAIAALLVTQFSQYLTLDVAKAKQAELANYIDAHLLQAALIYFVVYVLLTAFSIPGATVVTLLGAALFG
FWLSLLLASFASTIGATLAFLSSRFLLRDWVQAKFADKLQTINQGIERDGAFYLLSLRLIPIFPFFLINLVMGLTPISTW
RYYWVSQLGMLPGTAVYLNAGTQLAEISSLGEIVSLPVLASFVLLGVFPIVVKWLMGKFQQRATQSPVK
>Mature_229_residues
MYKKLIIAIVLIAIAALLVTQFSQYLTLDVAKAKQAELANYIDAHLLQAALIYFVVYVLLTAFSIPGATVVTLLGAALFG
FWLSLLLASFASTIGATLAFLSSRFLLRDWVQAKFADKLQTINQGIERDGAFYLLSLRLIPIFPFFLINLVMGLTPISTW
RYYWVSQLGMLPGTAVYLNAGTQLAEISSLGEIVSLPVLASFVLLGVFPIVVKWLMGKFQQRATQSPVK

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI66392190, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI18087813, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87081964, Length=137, Percent_Identity=34.3065693430657, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17532687, Length=165, Percent_Identity=28.4848484848485, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18859941, Length=225, Percent_Identity=26.2222222222222, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25230; Mature: 25230

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKKLIIAIVLIAIAALLVTQFSQYLTLDVAKAKQAELANYIDAHLLQAALIYFVVYVLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAFSIPGATVVTLLGAALFGFWLSLLLASFASTIGATLAFLSSRFLLRDWVQAKFADKLQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TINQGIERDGAFYLLSLRLIPIFPFFLINLVMGLTPISTWRYYWVSQLGMLPGTAVYLNA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC
GTQLAEISSLGEIVSLPVLASFVLLGVFPIVVKWLMGKFQQRATQSPVK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYKKLIIAIVLIAIAALLVTQFSQYLTLDVAKAKQAELANYIDAHLLQAALIYFVVYVLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAFSIPGATVVTLLGAALFGFWLSLLLASFASTIGATLAFLSSRFLLRDWVQAKFADKLQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TINQGIERDGAFYLLSLRLIPIFPFFLINLVMGLTPISTWRYYWVSQLGMLPGTAVYLNA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC
GTQLAEISSLGEIVSLPVLASFVLLGVFPIVVKWLMGKFQQRATQSPVK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]