| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227081772
Identifier: 227081772
GI number: 227081772
Start: 1680056
End: 1680604
Strand: Direct
Name: 227081772
Synonym: VCM66_1559
Alternate gene names: NA
Gene position: 1680056-1680604 (Clockwise)
Preceding gene: 227081771
Following gene: 227081774
Centisome position: 58.08
GC content: 44.63
Gene sequence:
>549_bases ATGTCAACGGAAACCATTATTCAAGAAGTCGATCATTGGCTTAATCAGGTCGTGATCGGCTTAAACTTATGCCCATTTGC CGCAAAACCACAGCGTAATCAGCAAATTAAAATCTATGTCAGTGAAGCCCGTGATGAAGAAGCACTGCTGCAACATATTT ACGATCAGTTGCTTGAACTTGATACGAAAGAGCCGCAAGAGCTTGAAACCACGCTCGTTGTTGTCCCAAACCTGCTGCAC GATTTTGTTGATTACAATTTTTACATCGACTGGGTGGAAGCATTAATTCGCCAACAAGACTGGGAAGGTGTGTTTCAAGT CGCGACGTTTCATCCTGATTACTGCTTTGCAGGCACAGATCCAGAGGATGATGAGAACCTCACCAACCGCTCACCCTACC CGATCTTTCACCTGATCCGCGAAGAGAGCATGGAAAAAGTGCTGAAACACTATCCAAATCCAGAAGCCATCCCAGAGACC AATATTGCAAGAGTCAGCAGCCTTTCTGCACAAGAAAGAAAACAGCTTTTCCCTTATCTGTTTCTCTAA
Upstream 100 bases:
>100_bases AAACGCCACAGGGCAGTCAGGCTTTGGCCAGCCCTTCGGCCTAAGTTGTGCTATGCTCAGCGCCAAATGATAAATGTAAA ACGAAGAATCTGAGCTCAAC
Downstream 100 bases:
>100_bases ACACATCAGCATATTGATGGCTAATCGTGCCAACTAACAGGAAGTAGACTTCATTCTCTCCAGAGACAAAAATCCCGCCA GTTAGCGGGATTTTTATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MSTETIIQEVDHWLNQVVIGLNLCPFAAKPQRNQQIKIYVSEARDEEALLQHIYDQLLELDTKEPQELETTLVVVPNLLH DFVDYNFYIDWVEALIRQQDWEGVFQVATFHPDYCFAGTDPEDDENLTNRSPYPIFHLIREESMEKVLKHYPNPEAIPET NIARVSSLSAQERKQLFPYLFL
Sequences:
>Translated_182_residues MSTETIIQEVDHWLNQVVIGLNLCPFAAKPQRNQQIKIYVSEARDEEALLQHIYDQLLELDTKEPQELETTLVVVPNLLH DFVDYNFYIDWVEALIRQQDWEGVFQVATFHPDYCFAGTDPEDDENLTNRSPYPIFHLIREESMEKVLKHYPNPEAIPET NIARVSSLSAQERKQLFPYLFL >Mature_181_residues STETIIQEVDHWLNQVVIGLNLCPFAAKPQRNQQIKIYVSEARDEEALLQHIYDQLLELDTKEPQELETTLVVVPNLLHD FVDYNFYIDWVEALIRQQDWEGVFQVATFHPDYCFAGTDPEDDENLTNRSPYPIFHLIREESMEKVLKHYPNPEAIPETN IARVSSLSAQERKQLFPYLFL
Specific function: Unknown
COG id: COG3310
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21364; Mature: 21233
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTETIIQEVDHWLNQVVIGLNLCPFAAKPQRNQQIKIYVSEARDEEALLQHIYDQLLEL CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHC DTKEPQELETTLVVVPNLLHDFVDYNFYIDWVEALIRQQDWEGVFQVATFHPDYCFAGTD CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEEECCCEEECCCC PEDDENLTNRSPYPIFHLIREESMEKVLKHYPNPEAIPETNIARVSSLSAQERKQLFPYL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH FL CC >Mature Secondary Structure STETIIQEVDHWLNQVVIGLNLCPFAAKPQRNQQIKIYVSEARDEEALLQHIYDQLLEL CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHC DTKEPQELETTLVVVPNLLHDFVDYNFYIDWVEALIRQQDWEGVFQVATFHPDYCFAGTD CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEEECCCEEECCCC PEDDENLTNRSPYPIFHLIREESMEKVLKHYPNPEAIPETNIARVSSLSAQERKQLFPYL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH FL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA