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The map label for this gene is ycdC [C]

Identifier: 227081579

GI number: 227081579

Start: 1458360

End: 1458962

Strand: Reverse

Name: ycdC [C]

Synonym: VCM66_1363

Alternate gene names: 227081579

Gene position: 1458962-1458360 (Counterclockwise)

Preceding gene: 227081584

Following gene: 227081575

Centisome position: 50.44

GC content: 43.78

Gene sequence:

>603_bases
ATGCGGGTAAAAAGTGAAGAAAAAAGGCAAGCAATTCTAGAGATTGCTAAAGATTCCTTTACAAAACAAGGTTTTGAACA
GACTTCCATGTCGCATATTGCGAAGATGCTAGGGGGCTCGAAGGCCACGTTATACAACTATTTCAGCTCGAAAGAAGAGA
TTTTCACGGCGGTTATGGAGTCATCAGCGACAGAGCAAATCGCCCTCTCTTTCCTCTCACTTGACCATAATCGAGAGTTA
AAACCCGCCTTATTAGAATTTGGTTACAATTTTTTGAACTCGGTTTTAACGCAAGATGCGATGTCCATCTATCGAATGGC
GATTCATGAAGCCGACCGATCTGCAATCGGCAGACATTTTTATGAAAATGGCCCGAAACGAGGTTGGGCACGTTTAAGTC
GCTACATTACGTGCCAAATTGAATGTGGTTCATTGAAAGAGTGTGATCCTTGGATCGCCGCCATGCATTTCAAAGCGTTG
CTATCTGCACAATATTTTGAGCCCTTTTCATTAGGTGCGATTGAAAAACCGACCTCAAGTGAACTTAAAGCTACGACCCA
ACGCGCGGTAGAGGCCTTTTTATGCCTGTACGCAGCTGATTGA

Upstream 100 bases:

>100_bases
AAACCTTATAACTAAACCGTACCGTACAGTTATACTCTTGACAGAAGGAAACCGTCAAGGGAAACTTATCCACAATTTCT
AACTGGAAATAGATGAACTC

Downstream 100 bases:

>100_bases
ACTGAAAAATAGAATAGAAAAAGCCGGGAAATTCCCGGCTTTTTCTGAAGTGTTCGTATTAATCTTGCACCGCACGCTTA
TGTTTGGGCACATAGTTCAA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Transcription Regulator Protein TetR Family; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein Tetr Family; TetR-Family Trancriptional Regulatory Protein; TetR-Like Virulence Regulator; TetR Family Transcriptional RegulatoR; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; TetR-Type Transcriptional Regulator; Transcriptional Regulator TetR/AcrR Family; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; Transcription Regulator Protein Tetr Family; TetR Family Regulatory Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVMESSATEQIALSFLSLDHNREL
KPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIGRHFYENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKAL
LSAQYFEPFSLGAIEKPTSSELKATTQRAVEAFLCLYAAD

Sequences:

>Translated_200_residues
MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVMESSATEQIALSFLSLDHNREL
KPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIGRHFYENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKAL
LSAQYFEPFSLGAIEKPTSSELKATTQRAVEAFLCLYAAD
>Mature_200_residues
MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVMESSATEQIALSFLSLDHNREL
KPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIGRHFYENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKAL
LSAQYFEPFSLGAIEKPTSSELKATTQRAVEAFLCLYAAD

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22608; Mature: 22608

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVME
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
SSATEQIALSFLSLDHNRELKPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIGRHF
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKALLSAQYFEPFSLGAIEKPTSS
HHCCCCHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
ELKATTQRAVEAFLCLYAAD
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVME
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
SSATEQIALSFLSLDHNRELKPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIGRHF
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKALLSAQYFEPFSLGAIEKPTSS
HHCCCCHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
ELKATTQRAVEAFLCLYAAD
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA