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The map label for this gene is yedQ [C]

Identifier: 227081538

GI number: 227081538

Start: 1413600

End: 1415603

Strand: Reverse

Name: yedQ [C]

Synonym: VCM66_1322

Alternate gene names: 227081538

Gene position: 1415603-1413600 (Counterclockwise)

Preceding gene: 227081542

Following gene: 227081535

Centisome position: 48.94

GC content: 45.41

Gene sequence:

>2004_bases
TTGTTTATCAAGTTAATGAGGAATATATTTTCCGAACTAACATCACATATTCAGAACATGAAACTCTATTTTAAACGCTC
GTTGCTTGTCTTTAGCCTAATGTCCTCATTCTGCGTCGCCTCTGAACGATCTGCATGGGAAGAGGTTTACGCCAAATCTC
AACACAAACAAACAGAGACGGCCCTAAAACTATTACAGGATCGCTACCATTCCCTTCCTGAAGGGGCAGAAAAACTCTAT
TTAACCTCTAAATTACACGGCTATTTCGTGCTCAAAGGGCAGCCCTATTATGGTGAATTGGTCAATTCCCATGATACTTA
CGCGCTGACAGAACAACGCTTCCTAGACGCGTTGAATCATGAAGAAAGTCTCGATTACCACTCTGCAGAAGAAACCTACT
TAACCTTCTACGCCGAGATGAAACAAAAAAACGACCAAGATGGCATGGTGCTATTTGAATACCATCTTTGTCGTCTTTTC
CAGCGGCATGGCCGCCCGTACCAAGCTCGTTTCTATTGCTCACAGATGGATCAGCGCCTTCTTAATGCTGAAGATCCCCT
ATTTCCTCGCTATCGCGGCCTACACCTCGTCGCCAATAATTTGGAGTTCTTAGGGGAATATGAAGAGGCGCTGCAAACTT
ACGATCTGCTACTCAGTCTGCTGCCTGATTATGTCGACCCATCCGGTATTTATAACGATGTCGGGCTTCTGATGGGGACA
TTAGGCCAGTATGAATCGGCCTTGGACTACCTCAATAAAGCATTGGAGTATCGACTCGAACAAGGCAACCCACTACTTAT
CGCGCAAGTAGAACACAGTTTGGGTGATACTTACTTCAAGCAAGGTCGATATGAAGAAAGCATCCTCTATTTTGAACAAG
CGAAAGCCCATCTTACTCCCGCTAATTATCTGTTTGGGTTGGCTTACGTGCACCTAGGTTTAGGCAAAGCGTACATTGAA
CTCAATAATTTCGTTGAAGGCGACCAACATCTCTTTCAGGCTCTCGAGTATGTCAATCAACATAAAGACCAACATTTGCA
GGGACTGATTTACTTATCACTTGCGCAAGCCCATTTCAAAGAGCAGAAATACGCGCAAGCGATTGACTATGCTAATCAAG
CTGTCGCGATTAGCGAGAGCGCTTCTCTGCCACGCATTAAAGCGCAAGCTTATTTACAGTTAGCCAAAATTGCGGAGGCT
GAGCAGCAATACCAAGAGGCATTAAGCTGGTATCGCCAATATGCTGAGAGTGAGCTGTTGCTGCGCAACACAGAGCAGCG
TAAAGCTTTTGAAGCGCTCGATCTGGCGAAAGCGGAATTAGAACAAAAACGCGGCGTCAATTTTTGGCGAGAAAACTACC
AAGCGTTGGCCGAAAAATATGAAATGTTGAAGTGGCAACGTGTTTCACTTTCACTATTAGTGATTGTGTTTGCACTGATT
CTGCCCATTGCCCATTATCGTCGCAGAAAAGAGTGCGATCAGAATCAACAAGATAGCTTGCATGGAGTATTAAGCCGCAC
CAGTGGATTAGAGCGATTAACTCATATTGAAGCCTGCCAGCAAACTGAGCATGTCCATTTGCTTGCTCTATTGGATATTG
ACCAACTGAGGCAGTTCAATGAACGTCACGGCTATGAACGGGGCGATATTGCGTTACAAAATACAATCAATACCTTGCTG
CACCAGTTGCGTGCCAAGGAGTTTGTGTGTCGCTTAGGGGATGATGAATTCTTGGTGGTTATGCCAAACTGCAGACGTAC
TCTTTCGGAAACACGGCTGTTTGTGCTTCATCATGCGTTAAATGGCAAAACACCAACCGATGCTAAATCAACAGTTGGCT
TGAGCGTTACCCTCAGCTATTTAGCGGTAGAGAGTGGTTTGGCGAGTTTTACGCACTTTTATCCTAAGCTGGATAGCGCT
CTAAGCATCGCCAAACAGAGCGGCAATGGCGGCTTAATCGATGCCGCCGATCCCACTAATGCGCTGCTGACTGCTTGCTC
TTAA

Upstream 100 bases:

>100_bases
TCAAATGATAAACAAGCCAATGATGTACGTTTCAATCGCACGTTTAATACATTAGCCTGCTGCGACTATCACAAAATGAG
ATAGCAATCAGAATAACTCA

Downstream 100 bases:

>100_bases
GCGCACTCATTATCAGATCGCGATTATCGAGATACGCTTTAAGCCCAGCCTGACGTAAACCACAGGCTGGGCATTCACCA
CAGCCATCACCTATCAACCC

Product: GGDEF family protein

Products: NA

Alternate protein names: GGDEF Family Protein; GGDEF Domain-Containing Protein; Tetratricopeptide Repeat Family; Protein Serine/Threonine Phosphatase; Membrane Associated GGDEF Protein; TPR Repeat-Containing Protein; Diguanylate Cyclase With PAS/PAC Sensor; Response Regulator; Diguanylate Cyclase/Serine/Threonine Protein Kinase; Cyclic Nucleotide Phosphodiesterase

Number of amino acids: Translated: 667; Mature: 667

Protein sequence:

>667_residues
MFIKLMRNIFSELTSHIQNMKLYFKRSLLVFSLMSSFCVASERSAWEEVYAKSQHKQTETALKLLQDRYHSLPEGAEKLY
LTSKLHGYFVLKGQPYYGELVNSHDTYALTEQRFLDALNHEESLDYHSAEETYLTFYAEMKQKNDQDGMVLFEYHLCRLF
QRHGRPYQARFYCSQMDQRLLNAEDPLFPRYRGLHLVANNLEFLGEYEEALQTYDLLLSLLPDYVDPSGIYNDVGLLMGT
LGQYESALDYLNKALEYRLEQGNPLLIAQVEHSLGDTYFKQGRYEESILYFEQAKAHLTPANYLFGLAYVHLGLGKAYIE
LNNFVEGDQHLFQALEYVNQHKDQHLQGLIYLSLAQAHFKEQKYAQAIDYANQAVAISESASLPRIKAQAYLQLAKIAEA
EQQYQEALSWYRQYAESELLLRNTEQRKAFEALDLAKAELEQKRGVNFWRENYQALAEKYEMLKWQRVSLSLLVIVFALI
LPIAHYRRRKECDQNQQDSLHGVLSRTSGLERLTHIEACQQTEHVHLLALLDIDQLRQFNERHGYERGDIALQNTINTLL
HQLRAKEFVCRLGDDEFLVVMPNCRRTLSETRLFVLHHALNGKTPTDAKSTVGLSVTLSYLAVESGLASFTHFYPKLDSA
LSIAKQSGNGGLIDAADPTNALLTACS

Sequences:

>Translated_667_residues
MFIKLMRNIFSELTSHIQNMKLYFKRSLLVFSLMSSFCVASERSAWEEVYAKSQHKQTETALKLLQDRYHSLPEGAEKLY
LTSKLHGYFVLKGQPYYGELVNSHDTYALTEQRFLDALNHEESLDYHSAEETYLTFYAEMKQKNDQDGMVLFEYHLCRLF
QRHGRPYQARFYCSQMDQRLLNAEDPLFPRYRGLHLVANNLEFLGEYEEALQTYDLLLSLLPDYVDPSGIYNDVGLLMGT
LGQYESALDYLNKALEYRLEQGNPLLIAQVEHSLGDTYFKQGRYEESILYFEQAKAHLTPANYLFGLAYVHLGLGKAYIE
LNNFVEGDQHLFQALEYVNQHKDQHLQGLIYLSLAQAHFKEQKYAQAIDYANQAVAISESASLPRIKAQAYLQLAKIAEA
EQQYQEALSWYRQYAESELLLRNTEQRKAFEALDLAKAELEQKRGVNFWRENYQALAEKYEMLKWQRVSLSLLVIVFALI
LPIAHYRRRKECDQNQQDSLHGVLSRTSGLERLTHIEACQQTEHVHLLALLDIDQLRQFNERHGYERGDIALQNTINTLL
HQLRAKEFVCRLGDDEFLVVMPNCRRTLSETRLFVLHHALNGKTPTDAKSTVGLSVTLSYLAVESGLASFTHFYPKLDSA
LSIAKQSGNGGLIDAADPTNALLTACS
>Mature_667_residues
MFIKLMRNIFSELTSHIQNMKLYFKRSLLVFSLMSSFCVASERSAWEEVYAKSQHKQTETALKLLQDRYHSLPEGAEKLY
LTSKLHGYFVLKGQPYYGELVNSHDTYALTEQRFLDALNHEESLDYHSAEETYLTFYAEMKQKNDQDGMVLFEYHLCRLF
QRHGRPYQARFYCSQMDQRLLNAEDPLFPRYRGLHLVANNLEFLGEYEEALQTYDLLLSLLPDYVDPSGIYNDVGLLMGT
LGQYESALDYLNKALEYRLEQGNPLLIAQVEHSLGDTYFKQGRYEESILYFEQAKAHLTPANYLFGLAYVHLGLGKAYIE
LNNFVEGDQHLFQALEYVNQHKDQHLQGLIYLSLAQAHFKEQKYAQAIDYANQAVAISESASLPRIKAQAYLQLAKIAEA
EQQYQEALSWYRQYAESELLLRNTEQRKAFEALDLAKAELEQKRGVNFWRENYQALAEKYEMLKWQRVSLSLLVIVFALI
LPIAHYRRRKECDQNQQDSLHGVLSRTSGLERLTHIEACQQTEHVHLLALLDIDQLRQFNERHGYERGDIALQNTINTLL
HQLRAKEFVCRLGDDEFLVVMPNCRRTLSETRLFVLHHALNGKTPTDAKSTVGLSVTLSYLAVESGLASFTHFYPKLDSA
LSIAKQSGNGGLIDAADPTNALLTACS

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76872; Mature: 76872

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIKLMRNIFSELTSHIQNMKLYFKRSLLVFSLMSSFCVASERSAWEEVYAKSQHKQTET
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALKLLQDRYHSLPEGAEKLYLTSKLHGYFVLKGQPYYGELVNSHDTYALTEQRFLDALNH
HHHHHHHHHHCCCCCHHHEEEEEECCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHCC
EESLDYHSAEETYLTFYAEMKQKNDQDGMVLFEYHLCRLFQRHGRPYQARFYCSQMDQRL
HHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
LNAEDPLFPRYRGLHLVANNLEFLGEYEEALQTYDLLLSLLPDYVDPSGIYNDVGLLMGT
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LGQYESALDYLNKALEYRLEQGNPLLIAQVEHSLGDTYFKQGRYEESILYFEQAKAHLTP
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCHHHHHCCCCHHHHHHHHHHHHHCCH
ANYLFGLAYVHLGLGKAYIELNNFVEGDQHLFQALEYVNQHKDQHLQGLIYLSLAQAHFK
HHHHHHHHHHHHHCCHHHEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQKYAQAIDYANQAVAISESASLPRIKAQAYLQLAKIAEAEQQYQEALSWYRQYAESELL
HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNTEQRKAFEALDLAKAELEQKRGVNFWRENYQALAEKYEMLKWQRVSLSLLVIVFALI
HHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPIAHYRRRKECDQNQQDSLHGVLSRTSGLERLTHIEACQQTEHVHLLALLDIDQLRQFN
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
ERHGYERGDIALQNTINTLLHQLRAKEFVCRLGDDEFLVVMPNCRRTLSETRLFVLHHAL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHH
NGKTPTDAKSTVGLSVTLSYLAVESGLASFTHFYPKLDSALSIAKQSGNGGLIDAADPTN
CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCH
ALLTACS
HHHCCCC
>Mature Secondary Structure
MFIKLMRNIFSELTSHIQNMKLYFKRSLLVFSLMSSFCVASERSAWEEVYAKSQHKQTET
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALKLLQDRYHSLPEGAEKLYLTSKLHGYFVLKGQPYYGELVNSHDTYALTEQRFLDALNH
HHHHHHHHHHCCCCCHHHEEEEEECCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHCC
EESLDYHSAEETYLTFYAEMKQKNDQDGMVLFEYHLCRLFQRHGRPYQARFYCSQMDQRL
HHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
LNAEDPLFPRYRGLHLVANNLEFLGEYEEALQTYDLLLSLLPDYVDPSGIYNDVGLLMGT
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LGQYESALDYLNKALEYRLEQGNPLLIAQVEHSLGDTYFKQGRYEESILYFEQAKAHLTP
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCHHHHHCCCCHHHHHHHHHHHHHCCH
ANYLFGLAYVHLGLGKAYIELNNFVEGDQHLFQALEYVNQHKDQHLQGLIYLSLAQAHFK
HHHHHHHHHHHHHCCHHHEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQKYAQAIDYANQAVAISESASLPRIKAQAYLQLAKIAEAEQQYQEALSWYRQYAESELL
HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNTEQRKAFEALDLAKAELEQKRGVNFWRENYQALAEKYEMLKWQRVSLSLLVIVFALI
HHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPIAHYRRRKECDQNQQDSLHGVLSRTSGLERLTHIEACQQTEHVHLLALLDIDQLRQFN
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
ERHGYERGDIALQNTINTLLHQLRAKEFVCRLGDDEFLVVMPNCRRTLSETRLFVLHHAL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHH
NGKTPTDAKSTVGLSVTLSYLAVESGLASFTHFYPKLDSALSIAKQSGNGGLIDAADPTN
CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCH
ALLTACS
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA