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The map label for this gene is ydfH [H]

Identifier: 227081506

GI number: 227081506

Start: 1376461

End: 1377168

Strand: Direct

Name: ydfH [H]

Synonym: VCM66_1290

Alternate gene names: 227081506

Gene position: 1376461-1377168 (Clockwise)

Preceding gene: 227081501

Following gene: 227081507

Centisome position: 47.59

GC content: 49.58

Gene sequence:

>708_bases
TTGATGAAAAGTAGTCCGTTAGTCCGCCAAGCGAGCACTGAAAAAGAGAGCACCAAATCAGAGAATCTAACCGAATATCT
GATTGAAGCCATTGTTGAAGGTCAGCTCGCGCCGGGCAGTAAAATCTCTGAACCTGAGCTCGCCAAACAGTTTCAAGTCA
GCCGTGGCCCACTGCGTGAAGCGTTAATGCGAGTCGAAGGGCTTGGCTTGATAGAGCGTATTCCGCACATCGGTGCGCGA
GTGATTCAATTGTCACCCACCAAATTGGTTGAGCTGTATGCAGTGCGCGAAGCTCTGGAAGGCATGGCTGCAAGGCTTGC
AGCGCGCAATATTACCGAAATCGAACTGGCGGGCTTAGAAAGCTTATTGTCGACACATTCGACCCATATCGATCAGGTCG
AAGGTGCTTCTTACTTTCACCAGCAGGGTGATTTCGATTTCCACTACCGAATTATTCAGGCCTGCCGCAATCAACAACTG
ATTGGTTTGCTGTGTGATGAGCTTTACCACTTGCTGCGCATGTATCGTTACCAATCGCCGCGTTCGCATTCGCGTCCGGT
AGAAGCTTTGGAAGAACACAAATTTATTCTGCGTGCGATTCGCCAACGAGATGAAGAGTTGGCCGAAATGCTGATGCGTC
GCCACATCTCGCGCAGTCGCCAATTGATCGAACAACAAATAATGCTGGATGCCCAACAACAAGGTTAA

Upstream 100 bases:

>100_bases
CGACACTTTTATGGGCTATTTTTTCATCAGACCAAGATAGCGATGCGCATTTAACACAGAGTGAGTTGTGAACAGTTAGG
TGCGAACATGAGAATCACGA

Downstream 100 bases:

>100_bases
GGAGAATCCCATGAGTTTAAGTCCTGGCGCCAAATTCAGGCTGGCAGTGAAAACCCATCATCCACTGCAAATCGTCGGCA
CCATTAACCCTTACTGCGCG

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MMKSSPLVRQASTEKESTKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLREALMRVEGLGLIERIPHIGAR
VIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLESLLSTHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQL
IGLLCDELYHLLRMYRYQSPRSHSRPVEALEEHKFILRAIRQRDEELAEMLMRRHISRSRQLIEQQIMLDAQQQG

Sequences:

>Translated_235_residues
MMKSSPLVRQASTEKESTKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLREALMRVEGLGLIERIPHIGAR
VIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLESLLSTHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQL
IGLLCDELYHLLRMYRYQSPRSHSRPVEALEEHKFILRAIRQRDEELAEMLMRRHISRSRQLIEQQIMLDAQQQG
>Mature_235_residues
MMKSSPLVRQASTEKESTKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLREALMRVEGLGLIERIPHIGAR
VIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLESLLSTHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQL
IGLLCDELYHLLRMYRYQSPRSHSRPVEALEEHKFILRAIRQRDEELAEMLMRRHISRSRQLIEQQIMLDAQQQG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=186, Percent_Identity=31.7204301075269, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082149, Length=211, Percent_Identity=26.5402843601896, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26955; Mature: 26955

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKSSPLVRQASTEKESTKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLRE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHH
ALMRVEGLGLIERIPHIGARVIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLE
HHHHHHCCHHHHHHHHHCHHEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLLSTHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQLIGLLCDELYHLLRMYRYQSP
HHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
RSHSRPVEALEEHKFILRAIRQRDEELAEMLMRRHISRSRQLIEQQIMLDAQQQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMKSSPLVRQASTEKESTKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLRE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHH
ALMRVEGLGLIERIPHIGARVIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLE
HHHHHHCCHHHHHHHHHCHHEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLLSTHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQLIGLLCDELYHLLRMYRYQSP
HHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
RSHSRPVEALEEHKFILRAIRQRDEELAEMLMRRHISRSRQLIEQQIMLDAQQQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]