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The map label for this gene is yiaN [C]

Identifier: 227081447

GI number: 227081447

Start: 1306825

End: 1308108

Strand: Direct

Name: yiaN [C]

Synonym: VCM66_1230

Alternate gene names: 227081447

Gene position: 1306825-1308108 (Clockwise)

Preceding gene: 227081446

Following gene: 227081448

Centisome position: 45.18

GC content: 50.08

Gene sequence:

>1284_bases
ATGATTGGTATTGTGATGTTTTTCGTTGCCCTGTTTGCACTATTACTGGGTTTCCCCGTTGCTTTTACCTTTGGGGGCAT
TGCGCTGATTTTTGGTTTGTGGGCTGAAGGCATAGAGATGTTTGCGTTCATGCCTTACCGCATTCAATCGATCATGGAAA
ACACCGTGTTAATGGCGGTGCCGCTGTTTGTGTTTATGGGTTTGGTGCTACAAAAAACCAAGCTGGCGGAGCAGCTATTA
GAGTCGATGGGGCGCTTATTTGGTGGCATTCACGGTGGTGTGGCGATTTCTACCGTATTGGTGGGCACTTTACTCGCCGC
CTCGACAGGGGTAGTGGGGGCATCGGTTGTGGCGATGGGACTAATCTCACTGCCAGTGATGCTCAAATACCGTTACGACA
AAGGGTTGGCGTGTGGCACCATCTGTGCGTCGGGGACCCTTGGACAAATTATTCCACCTTCTATCGTATTGATTCTATTG
GGGGATGTGCTTGGGGTTCCGGTTGGCGATCTGTTCCAAGCCGCACTCTGGCCGGGCTTGATGCTGGTGGCGGCGTATAT
CATCTACATCCTGATTTACGCCAAGCTGAATCCGCAAGCGGCGATGCCTATTGAACCTGATGCCGATTTATCACGTCGTC
AAGAAGTGGTGAAAGCACTGAAAGCGGTTATCCCGCCGTTGGCGCTGATTGTGGTGGTTCTGGGCTCGATTTTCGCTGGT
GTGGCGACGCCCACAGAATCCGCAGCACTTGGTGGCGCGGGCGCGATTTTACTGGCATTGGCGTATGGTCAATTCAGTTG
GTCAATGGTCTATGATGCCTCTAAAGAAACCGTCAAAGTGACTGCCATGGTGTTTGCTATTTTGCTGGGCGCGACCGCGT
TCTCGATGGCGTTCACTTATACCGGTGGTGATGAGCTGGTCGAAGAGTGGATGATGAATCTGCCCGGAGATAAATGGGGC
TTCTTGATTGTCACTATGTTGGTGATCTTAATCCTGGGTTTCTTTATCGACTTCGTAGAAATCTGTTTCATCATAGTACC
GATTTTGGCTCCAGTCGCTGTGCTGATGGATGTGGATATGACGTGGTTTGCTATCTTAATTGCGATGAACTTGCAAACGT
CGTTCTTAACTCCGCCGTTCGGGTTTAGTTTGTTCTATCTGAAAGGGGTTGCGCCAAAGTCGGTCACCACCATGGACATC
TATCGCGGCGTGGTGCCCTTTATCCTGATCCAGATTTTGGTGTTGATTTCGTTGATGGTATTCCCAAGCTTTTATGGAAT
GTGA

Upstream 100 bases:

>100_bases
TTTCATGGCGATAAGTGGCGTCGGCTTGATCATTCACTCGCTCAATAAAGTGTTTAACCCACGTCTGATGCATGCAGACC
AAACTAAGTAAGGGAAACGT

Downstream 100 bases:

>100_bases
TCCGACTCAAGAGTGAGCGTATCGAAATTCAATCCACAACAACAAGTTGTTAGAGTGAAACTGCTTTTCGAAGGGTCGGA
AAGCAGTTTTTTTATGGGGA

Product: Putative TRAP transporter large permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFVFMGLVLQKTKLAEQLL
ESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILL
GDVLGVPVGDLFQAALWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAG
VATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWG
FLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDI
YRGVVPFILIQILVLISLMVFPSFYGM

Sequences:

>Translated_427_residues
MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFVFMGLVLQKTKLAEQLL
ESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILL
GDVLGVPVGDLFQAALWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAG
VATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWG
FLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDI
YRGVVPFILIQILVLISLMVFPSFYGM
>Mature_427_residues
MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFVFMGLVLQKTKLAEQLL
ESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILL
GDVLGVPVGDLFQAALWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAG
VATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWG
FLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDI
YRGVVPFILIQILVLISLMVFPSFYGM

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=397, Percent_Identity=26.7002518891688, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45783; Mature: 45783

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCC
>Mature Secondary Structure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HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]