Click here to switch to the map view.

The map label for this gene is 227081421

Identifier: 227081421

GI number: 227081421

Start: 1278526

End: 1279038

Strand: Reverse

Name: 227081421

Synonym: VCM66_1204

Alternate gene names: NA

Gene position: 1279038-1278526 (Counterclockwise)

Preceding gene: 227081422

Following gene: 227081420

Centisome position: 44.22

GC content: 47.17

Gene sequence:

>513_bases
ATGAACAGCACATTTATTGTGAATTTTGTCGGAAAAGCAACGCCTGCCACCATAAAGCAACTGGCAGCCGTCACTCACGA
AAATGGAGGTAAGTGGCTCATCAGTAAGGTGAATTTCATTGAAGACAGCGTTGCTGCTGTGATCAAAATTGAATTACCTG
CAGACAATGCCAGCACAGTGAAGCAAGCCTTCCAAACCTACCCCAGTCTTTTGGTCGAAATTACCGATGCCGACCCGCAT
GTCCATAAGAGTGATGCTGTCTATAAGGTCAGATTGGATGCCAACGATCGCGCAGGGATCGTGAATGAAATAACTCATCT
GCTTGATGGCCAAGGTATTAGCATCTTAGATATGGACTGCCAACGTGTGTTTATCGCCGGCGGTGGCGGTATCAGCTCAA
GCCTATTTACGGCCAATGTCGCTATGCGCCTGCCAGTGAATATTGAAATCGATGACGTCATCAATGAGCTTGAAGCGTTA
AGCGAAGATACTCGCGTGACGCTCGAAGCTTAA

Upstream 100 bases:

>100_bases
GAGACTCCCTGTCCAAAAATTGATTTTGGTCAATTCCACCCCAAGTTAACCTCCTACACTCAAAGAGCGAGCAACGCGTA
TTCCTTGTCAGGAGGCCAAC

Downstream 100 bases:

>100_bases
CTCTTTTCATCCCATCCTAACGAGGGAGGCTTAGCCTCCCTGCTTGCGTTTGAGTTATTGCACTAACTCTCATCAAATAG
TTGAGCTGGTTAACAAAATG

Product: hypothetical protein

Products: NA

Alternate protein names: Glycine Cleavage System Regulatory Protein-Like Protein; ACT Domain-Containing Protein

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MNSTFIVNFVGKATPATIKQLAAVTHENGGKWLISKVNFIEDSVAAVIKIELPADNASTVKQAFQTYPSLLVEITDADPH
VHKSDAVYKVRLDANDRAGIVNEITHLLDGQGISILDMDCQRVFIAGGGGISSSLFTANVAMRLPVNIEIDDVINELEAL
SEDTRVTLEA

Sequences:

>Translated_170_residues
MNSTFIVNFVGKATPATIKQLAAVTHENGGKWLISKVNFIEDSVAAVIKIELPADNASTVKQAFQTYPSLLVEITDADPH
VHKSDAVYKVRLDANDRAGIVNEITHLLDGQGISILDMDCQRVFIAGGGGISSSLFTANVAMRLPVNIEIDDVINELEAL
SEDTRVTLEA
>Mature_170_residues
MNSTFIVNFVGKATPATIKQLAAVTHENGGKWLISKVNFIEDSVAAVIKIELPADNASTVKQAFQTYPSLLVEITDADPH
VHKSDAVYKVRLDANDRAGIVNEITHLLDGQGISILDMDCQRVFIAGGGGISSSLFTANVAMRLPVNIEIDDVINELEAL
SEDTRVTLEA

Specific function: Unknown

COG id: COG2716

COG function: function code E; Glycine cleavage system regulatory protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18320; Mature: 18320

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSTFIVNFVGKATPATIKQLAAVTHENGGKWLISKVNFIEDSVAAVIKIELPADNASTV
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECHHCCCEEEEEEEEECCCCHHHH
KQAFQTYPSLLVEITDADPHVHKSDAVYKVRLDANDRAGIVNEITHLLDGQGISILDMDC
HHHHHHCHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCC
QRVFIAGGGGISSSLFTANVAMRLPVNIEIDDVINELEALSEDTRVTLEA
EEEEEECCCCCCCCEEEEEEEEEECCCEEHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MNSTFIVNFVGKATPATIKQLAAVTHENGGKWLISKVNFIEDSVAAVIKIELPADNASTV
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECHHCCCEEEEEEEEECCCCHHHH
KQAFQTYPSLLVEITDADPHVHKSDAVYKVRLDANDRAGIVNEITHLLDGQGISILDMDC
HHHHHHCHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCC
QRVFIAGGGGISSSLFTANVAMRLPVNIEIDDVINELEALSEDTRVTLEA
EEEEEECCCCCCCCEEEEEEEEEECCCEEHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA