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The map label for this gene is yciO [H]

Identifier: 227081350

GI number: 227081350

Start: 1207548

End: 1208168

Strand: Direct

Name: yciO [H]

Synonym: VCM66_1133

Alternate gene names: 227081350

Gene position: 1207548-1208168 (Clockwise)

Preceding gene: 227081349

Following gene: 227081351

Centisome position: 41.75

GC content: 50.4

Gene sequence:

>621_bases
ATGAGCCAGTTTTTTTATGTTCATCCTGAGAACCCTCAAACCCGCCTGATCAACCAAGCGGTCGCGATTATTCGCAATGG
TGGGGTAGTGGTTTACCCAACCGATTCTGGTTACGCACTGGGCTGCCAGCTTGAAAATAAGCACGGGATGGAACGCATTT
GTCAAATTCGCCGTCTCGACGATAAGCACAATTTTACGCTGTTGTGCCGCGATTTGTCTGAGCTTTCGCTGTATGCGCGT
GTGGATAACACGGCGTTTCGTTTGTTGAAAAACAATACACCGGGACCTTACACCTTCATATTCAAAGGAACCAAAGAGGT
TCCGCGCCGTCTGATGAATGAGAAGCGAAAGACCATAGGTATCCGGGTACCGAATAACAAAATTGCCTTGGATCTACTGG
AAGCGCTCGGCGAGCCACTCATGTCGACATCGCTGATCCTGCCAGGCAACGATTTTACTGAGTCTGATCCCGAGGAAATT
CGCGATCGCTTAGAGCACGCGGTGGATGTGATCCTCAATGGTGGCTATTTAGGTCAGCAACCCACGACAGTGATTGATTT
TAGCGACGATGAAGTGGTAGTGGCGCGTGTCGGAGCCGGTGATCCGACCCCGTTTCAGTAG

Upstream 100 bases:

>100_bases
GCCGAAACCTTTGGTTACCTGCCGGAGTAGAACCTGTATGGAAAGATTGGGGCTTATCCCCAAGCAATAGAGTCGAGAGA
CTCGATGAAGAGGAATAACC

Downstream 100 bases:

>100_bases
TTGAATGAGGTGGCCGCGAATCGCTGACAAAACGGGTGCTTTTATCCACAAAATTTGCGATACTACGCGGCCGCGATTTT
AACATCGCAACCCGTCATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHPENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELSLYAR
VDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIGIRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEI
RDRLEHAVDVILNGGYLGQQPTTVIDFSDDEVVVARVGAGDPTPFQ

Sequences:

>Translated_206_residues
MSQFFYVHPENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELSLYAR
VDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIGIRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEI
RDRLEHAVDVILNGGYLGQQPTTVIDFSDDEVVVARVGAGDPTPFQ
>Mature_205_residues
SQFFYVHPENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELSLYARV
DNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIGIRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIR
DRLEHAVDVILNGGYLGQQPTTVIDFSDDEVVVARVGAGDPTPFQ

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=74.6341463414634, Blast_Score=328, Evalue=1e-91,
Organism=Escherichia coli, GI2367210, Length=182, Percent_Identity=24.1758241758242, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23159; Mature: 23028

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHPENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLD
CCCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCC
DKHNFTLLCRDLSELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIG
CCCCEEEEEECHHHHEEEEEECCHHEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHEEE
IRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQQ
EEECCCHHHHHHHHHHCCHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PTTVIDFSDDEVVVARVGAGDPTPFQ
CCEEEEECCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
SQFFYVHPENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLD
CCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCC
DKHNFTLLCRDLSELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIG
CCCCEEEEEECHHHHEEEEEECCHHEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHEEE
IRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQQ
EEECCCHHHHHHHHHHCCHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PTTVIDFSDDEVVVARVGAGDPTPFQ
CCEEEEECCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]