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The map label for this gene is ybjE [H]

Identifier: 227081324

GI number: 227081324

Start: 1180210

End: 1181115

Strand: Reverse

Name: ybjE [H]

Synonym: VCM66_1107

Alternate gene names: 227081324

Gene position: 1181115-1180210 (Counterclockwise)

Preceding gene: 227081325

Following gene: 227081323

Centisome position: 40.83

GC content: 48.23

Gene sequence:

>906_bases
ATGCTGTCAGGGATGATCTTTGTTTTTGCACCACTCGTGGTGGGTTACCTATTCATTATTCGTAACCCATCTCATCTCCA
TCGTTTGAGTCGAGCAACCTCGCATCTCGTTTACGTCATCTTATTTTTGATGGGTCTCAGTCTCGCGGGCTTAGATAACC
TACAAAGTAACTTACAAACCATTGTCAAATACACGGCCGTTTTTTTCGTGGTGCTAGGGACATGCAACCTCTTAGTCTTA
CCTTTAGTTGATCGCTATCTGCCACTTAGTACCGATATCACTCATAAAAAAGTCCCGCTCTCAAGCATGATGTTGGAGTC
TGCGAAGCTTATTTTGGTGGTCGGTGCAGGCCTGGTGGCGGGTGTGTTACTGAATCAAGACTTACATTGGGTCGAATCCG
CGAGCGGCTGGATCCTCTTCCTTTTGCTGTTTTTTATTGGTATTCAACTGCGCAACAGTGGTTTATCGCTCAAACAGATC
TTGCTAAATAAGCACGGAATGGTTATTGCGGCAGTGATCATCCTAACCAGTTGGCTAGGTGGCGTGATTGCTGCGTGGCT
ACTCGACATGCCAATTTACCAAGCACTGGCGATGGCCTCAGGTTTTGGCTGGTACTCATTAGCCGGTATCTTAGTCGGCG
ATGCTTTTGGGCCGGTACTCGGCGGAGCCTCTTTTATGATTGAGCTACTGCGCGAGCTAGTCGCGCTGGTGTTAATTCCC
ATGCTGATCCGGCGCAAACCCTGTACCGCGATTGGTTATGCAGGAGCGACAGCCATGGATTTTACCCTGCCCGTCATTCA
AACCACTGGCGGTGTAAAATGTGTTCCGGTGGCGATTGTTAGCGGCTTTATTCTGAGTCTATTGGTGCCGGTTTTGATCC
TGTTCTTTGTTTCTCTTGCAAGCTAG

Upstream 100 bases:

>100_bases
TGCTCTACCAGCTCAGCAACTTAAGTGAAATGGAATTTAACAACAAGCTAAGTGATGTGATCAGTGCCAGTGGCATCTGA
AGTACCACTGTGAGGATGTT

Downstream 100 bases:

>100_bases
ATCGCAGGATTTCCCTCTGAGCTCGTTTACAATGTTTCGCCTTGAGATTTACAATTTAGTAAACAATATTTTAACCTAAC
GCCCCTAAATGATTGGGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLSGMIFVFAPLVVGYLFIIRNPSHLHRLSRATSHLVYVILFLMGLSLAGLDNLQSNLQTIVKYTAVFFVVLGTCNLLVL
PLVDRYLPLSTDITHKKVPLSSMMLESAKLILVVGAGLVAGVLLNQDLHWVESASGWILFLLLFFIGIQLRNSGLSLKQI
LLNKHGMVIAAVIILTSWLGGVIAAWLLDMPIYQALAMASGFGWYSLAGILVGDAFGPVLGGASFMIELLRELVALVLIP
MLIRRKPCTAIGYAGATAMDFTLPVIQTTGGVKCVPVAIVSGFILSLLVPVLILFFVSLAS

Sequences:

>Translated_301_residues
MLSGMIFVFAPLVVGYLFIIRNPSHLHRLSRATSHLVYVILFLMGLSLAGLDNLQSNLQTIVKYTAVFFVVLGTCNLLVL
PLVDRYLPLSTDITHKKVPLSSMMLESAKLILVVGAGLVAGVLLNQDLHWVESASGWILFLLLFFIGIQLRNSGLSLKQI
LLNKHGMVIAAVIILTSWLGGVIAAWLLDMPIYQALAMASGFGWYSLAGILVGDAFGPVLGGASFMIELLRELVALVLIP
MLIRRKPCTAIGYAGATAMDFTLPVIQTTGGVKCVPVAIVSGFILSLLVPVLILFFVSLAS
>Mature_301_residues
MLSGMIFVFAPLVVGYLFIIRNPSHLHRLSRATSHLVYVILFLMGLSLAGLDNLQSNLQTIVKYTAVFFVVLGTCNLLVL
PLVDRYLPLSTDITHKKVPLSSMMLESAKLILVVGAGLVAGVLLNQDLHWVESASGWILFLLLFFIGIQLRNSGLSLKQI
LLNKHGMVIAAVIILTSWLGGVIAAWLLDMPIYQALAMASGFGWYSLAGILVGDAFGPVLGGASFMIELLRELVALVLIP
MLIRRKPCTAIGYAGATAMDFTLPVIQTTGGVKCVPVAIVSGFILSLLVPVLILFFVSLAS

Specific function: Unknown

COG id: COG2431

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1452 [H]

Homologues:

Organism=Escherichia coli, GI87081795, Length=297, Percent_Identity=52.5252525252525, Blast_Score=278, Evalue=4e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005642
- ProDom:   PD022789 [H]

Pfam domain/function: PF03956 DUF340 [H]

EC number: NA

Molecular weight: Translated: 32434; Mature: 32434

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSGMIFVFAPLVVGYLFIIRNPSHLHRLSRATSHLVYVILFLMGLSLAGLDNLQSNLQT
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
IVKYTAVFFVVLGTCNLLVLPLVDRYLPLSTDITHKKVPLSSMMLESAKLILVVGAGLVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCEEEEEHHHHHH
GVLLNQDLHWVESASGWILFLLLFFIGIQLRNSGLSLKQILLNKHGMVIAAVIILTSWLG
HHHHCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
GVIAAWLLDMPIYQALAMASGFGWYSLAGILVGDAFGPVLGGASFMIELLRELVALVLIP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
MLIRRKPCTAIGYAGATAMDFTLPVIQTTGGVKCVPVAIVSGFILSLLVPVLILFFVSLA
HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
S
C
>Mature Secondary Structure
MLSGMIFVFAPLVVGYLFIIRNPSHLHRLSRATSHLVYVILFLMGLSLAGLDNLQSNLQT
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
IVKYTAVFFVVLGTCNLLVLPLVDRYLPLSTDITHKKVPLSSMMLESAKLILVVGAGLVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCEEEEEHHHHHH
GVLLNQDLHWVESASGWILFLLLFFIGIQLRNSGLSLKQILLNKHGMVIAAVIILTSWLG
HHHHCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
GVIAAWLLDMPIYQALAMASGFGWYSLAGILVGDAFGPVLGGASFMIELLRELVALVLIP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
MLIRRKPCTAIGYAGATAMDFTLPVIQTTGGVKCVPVAIVSGFILSLLVPVLILFFVSLA
HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]