| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227081147
Identifier: 227081147
GI number: 227081147
Start: 996452
End: 997267
Strand: Direct
Name: 227081147
Synonym: VCM66_0929
Alternate gene names: NA
Gene position: 996452-997267 (Clockwise)
Preceding gene: 227081146
Following gene: 227081148
Centisome position: 34.45
GC content: 39.58
Gene sequence:
>816_bases ATGATGAATTTATTTAAAACGACCATATTATTCTCAACCATCACCATGGCCGTTGGATGCAGTAATTTAGACAGTTCGAG TGTGTTCAATGATGTGGCGAAGAATGTCAAAGAAAGGCACAACTATGTTCAAGTTGTCGCGAAAGATATTACTCCTGACG CAAAAGCAATTGTAGGACCTGATATTGTAAAAGCAGAGTTAAGCTATGTCGGTAATTTCCCTAAAGCTGAAGGCGTTAAT ATTGAAAATTCATACGTTGATATGAACGTCACTTATTTTAAAAATTATGACCAATATGACACTGTTGCTTATTCATCACA GAAGTTAAAAGTAGAAACATATCGTCCATTAGCTGAGACCTGTACCGAACATTGCACGACCTCGCAATGGTTTAAGTTCC CATTATCTCAAGAATATATTCAGCAACTGAACTCGGATTCAGTTGTGTTTACGCTGTCCTCGTCAACAGACAAAAACCAA GTAGAATTCACGGTTCCTAAAGCGTATTTTTTAGCGGTTATTAATGAGGCGAAATTTGTCTTACAAGGGACAGATGTGGC ACCTGTTGCTCCTATTGTTGCTGTTCAAGCGCAACCAACCGCATCCAAACCTAACGAAATGATCCAATATTTGTTTGGTG AAGCCAGTTCAGCAGAGCGCCAAGAATTTGCTAACTGGGCTTTTGCTAACCGTGCAGAGGTAGCCCAGCCTATGGTTACA CAAAATAAGTTGGTCGAAATGATGGCTGATTGGTACAAAAAAGCCGATAAAGCCGAAAAAGCATCGATTCTCTCTTGGTT GATTAGCCAAGAATAA
Upstream 100 bases:
>100_bases GTAGGTCTGGAATACGGTTTCTAATCAGACGAACCCTGCCTTTCTTTAATAAAAACGCCGGCCTTGTGCCGGTGTTTTTA CTCCATAAACAAGGACATAA
Downstream 100 bases:
>100_bases TTGCATTTCTCGCTGGATAGAGGCATGGTCTTTCCATGCCTCTGTGATTTTTTATGTGTCATGAATATTAGCCAGATTGC CAAACTCACCTCGCTGACTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MMNLFKTTILFSTITMAVGCSNLDSSSVFNDVAKNVKERHNYVQVVAKDITPDAKAIVGPDIVKAELSYVGNFPKAEGVN IENSYVDMNVTYFKNYDQYDTVAYSSQKLKVETYRPLAETCTEHCTTSQWFKFPLSQEYIQQLNSDSVVFTLSSSTDKNQ VEFTVPKAYFLAVINEAKFVLQGTDVAPVAPIVAVQAQPTASKPNEMIQYLFGEASSAERQEFANWAFANRAEVAQPMVT QNKLVEMMADWYKKADKAEKASILSWLISQE
Sequences:
>Translated_271_residues MMNLFKTTILFSTITMAVGCSNLDSSSVFNDVAKNVKERHNYVQVVAKDITPDAKAIVGPDIVKAELSYVGNFPKAEGVN IENSYVDMNVTYFKNYDQYDTVAYSSQKLKVETYRPLAETCTEHCTTSQWFKFPLSQEYIQQLNSDSVVFTLSSSTDKNQ VEFTVPKAYFLAVINEAKFVLQGTDVAPVAPIVAVQAQPTASKPNEMIQYLFGEASSAERQEFANWAFANRAEVAQPMVT QNKLVEMMADWYKKADKAEKASILSWLISQE >Mature_271_residues MMNLFKTTILFSTITMAVGCSNLDSSSVFNDVAKNVKERHNYVQVVAKDITPDAKAIVGPDIVKAELSYVGNFPKAEGVN IENSYVDMNVTYFKNYDQYDTVAYSSQKLKVETYRPLAETCTEHCTTSQWFKFPLSQEYIQQLNSDSVVFTLSSSTDKNQ VEFTVPKAYFLAVINEAKFVLQGTDVAPVAPIVAVQAQPTASKPNEMIQYLFGEASSAERQEFANWAFANRAEVAQPMVT QNKLVEMMADWYKKADKAEKASILSWLISQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30381; Mature: 30381
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNLFKTTILFSTITMAVGCSNLDSSSVFNDVAKNVKERHNYVQVVAKDITPDAKAIVGP CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC DIVKAELSYVGNFPKAEGVNIENSYVDMNVTYFKNYDQYDTVAYSSQKLKVETYRPLAET HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHEECCCEEEEHHCCCHHHH CTEHCTTSQWFKFPLSQEYIQQLNSDSVVFTLSSSTDKNQVEFTVPKAYFLAVINEAKFV HHHHCCCCHHHCCCCCHHHHHHCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHCCEEE LQGTDVAPVAPIVAVQAQPTASKPNEMIQYLFGEASSAERQEFANWAFANRAEVAQPMVT EECCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHH QNKLVEMMADWYKKADKAEKASILSWLISQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMNLFKTTILFSTITMAVGCSNLDSSSVFNDVAKNVKERHNYVQVVAKDITPDAKAIVGP CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC DIVKAELSYVGNFPKAEGVNIENSYVDMNVTYFKNYDQYDTVAYSSQKLKVETYRPLAET HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHEECCCEEEEHHCCCHHHH CTEHCTTSQWFKFPLSQEYIQQLNSDSVVFTLSSSTDKNQVEFTVPKAYFLAVINEAKFV HHHHCCCCHHHCCCCCHHHHHHCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHCCEEE LQGTDVAPVAPIVAVQAQPTASKPNEMIQYLFGEASSAERQEFANWAFANRAEVAQPMVT EECCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHH QNKLVEMMADWYKKADKAEKASILSWLISQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA