Click here to switch to the map view.

The map label for this gene is 227081146

Identifier: 227081146

GI number: 227081146

Start: 995326

End: 996375

Strand: Direct

Name: 227081146

Synonym: VCM66_0928

Alternate gene names: NA

Gene position: 995326-996375 (Clockwise)

Preceding gene: 227081145

Following gene: 227081147

Centisome position: 34.41

GC content: 45.05

Gene sequence:

>1050_bases
ATGGACAAAATGTTTAAACGTACTCTTCTGGGTGCAGCAGTAGCGATGGCGTCAACTGGTGCGTTTGCCGCATCTGAAAC
TGGTGCAATCGGTGTTCTGTCTGATTTCAACGTACAAGCGTACGGTGTTGCAGCAATCTCTGCTTTCTATCAAGAAGATA
GCAACGGTTATGACTACGAAAACGAATCTCGTATCGGTTTCCGTGCTAGCAAAGATATGTTTGATAACGTAAACGTATTC
ATGCAGATCGAATCAGGTTACGTTGGTGAAGATGGTAAAGGCAGCACGCTTGGTGCTCGTGATACTTTCCTCGGCCTACA
AGGCGATTGGGGTAAAGTACGTTTCGGTCGTATGCTGACACCACTATATGAAATCGTTGACTGGCCATACTCTAACCCAG
GTTTAGGTCGTGTATTCGACTGGGGTGGCGACGTTGCTGGTCACTATGATCGTAAAGGTGATATTGCGCGTTATGACTCT
CCAGCTTTCGGTGGTCTGACGTTCAACATTTCTGCTGGTCGTGGTGATGTGGGTACTAAAAGTTCTAACCACTTTGGTGC
GGCTGCACACTACAATGCTGCGGATATCGTAACGTTCCATGTTGGTTATGAAAACAACTCTAACTTCAAGTATGACTACA
AAACCAAAGATACAGCTGGTAAAGATGTCGATAATACATTCCTGACTGATGCAACAGCGTATATCGTAGGTTTTGAGTTG
CCTCTACCTGCTGGTTTTGGTTTAGCTGGTGCTTATAAGTACACTGAAGGTGCTTCTAAAACAGTGAAAGGTCAAGAAGG
CGAGCAAGGCCAATACTCTCTGATTGGTCAATACTGGAATGGCCCATGGGGCTTTAAAGTAGGTTACGCTGCCAACCTTG
AGTCTGAAGTGAACGGTGTTGAACAAAAAGATGATGATGAAGTATTGTCTGCACAGCTGATGTACGTGAAAAATGGTTTC
GTACCATACATCCGTGTTGGCCAGCATGATGCTTATGATTCAGCCGACAAGAAAGGTTTCGTACGTGTAGGTCTGGAATA
CGGTTTCTAA

Upstream 100 bases:

>100_bases
ATCGGTTTCGATACTCGAAAAGGAAATGACTTCTCCCTTCGGCGGCCAACTTAAGGGAGAAACTCAAAAAAACAGCTATA
TCCATTTTTAGGAGTTATCC

Downstream 100 bases:

>100_bases
TCAGACGAACCCTGCCTTTCTTTAATAAAAACGCCGGCCTTGTGCCGGTGTTTTTACTCCATAAACAAGGACATAAATGA
TGAATTTATTTAAAACGACC

Product: putative porin

Products: NA

Alternate protein names: Chitoporin; Outer Membrane Porin Protein; Chitoporin ChiP

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MDKMFKRTLLGAAVAMASTGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDYENESRIGFRASKDMFDNVNVF
MQIESGYVGEDGKGSTLGARDTFLGLQGDWGKVRFGRMLTPLYEIVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIARYDS
PAFGGLTFNISAGRGDVGTKSSNHFGAAAHYNAADIVTFHVGYENNSNFKYDYKTKDTAGKDVDNTFLTDATAYIVGFEL
PLPAGFGLAGAYKYTEGASKTVKGQEGEQGQYSLIGQYWNGPWGFKVGYAANLESEVNGVEQKDDDEVLSAQLMYVKNGF
VPYIRVGQHDAYDSADKKGFVRVGLEYGF

Sequences:

>Translated_349_residues
MDKMFKRTLLGAAVAMASTGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDYENESRIGFRASKDMFDNVNVF
MQIESGYVGEDGKGSTLGARDTFLGLQGDWGKVRFGRMLTPLYEIVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIARYDS
PAFGGLTFNISAGRGDVGTKSSNHFGAAAHYNAADIVTFHVGYENNSNFKYDYKTKDTAGKDVDNTFLTDATAYIVGFEL
PLPAGFGLAGAYKYTEGASKTVKGQEGEQGQYSLIGQYWNGPWGFKVGYAANLESEVNGVEQKDDDEVLSAQLMYVKNGF
VPYIRVGQHDAYDSADKKGFVRVGLEYGF
>Mature_349_residues
MDKMFKRTLLGAAVAMASTGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDYENESRIGFRASKDMFDNVNVF
MQIESGYVGEDGKGSTLGARDTFLGLQGDWGKVRFGRMLTPLYEIVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIARYDS
PAFGGLTFNISAGRGDVGTKSSNHFGAAAHYNAADIVTFHVGYENNSNFKYDYKTKDTAGKDVDNTFLTDATAYIVGFEL
PLPAGFGLAGAYKYTEGASKTVKGQEGEQGQYSLIGQYWNGPWGFKVGYAANLESEVNGVEQKDDDEVLSAQLMYVKNGF
VPYIRVGQHDAYDSADKKGFVRVGLEYGF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37955; Mature: 37955

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKMFKRTLLGAAVAMASTGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDYE
CCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCEEEEHHHHHHHHHHCCCCCCCCC
NESRIGFRASKDMFDNVNVFMQIESGYVGEDGKGSTLGARDTFLGLQGDWGKVRFGRMLT
CCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHHHH
PLYEIVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIARYDSPAFGGLTFNISAGRGDVGTK
HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCC
SSNHFGAAAHYNAADIVTFHVGYENNSNFKYDYKTKDTAGKDVDNTFLTDATAYIVGFEL
CCCCCCCEEECCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC
PLPAGFGLAGAYKYTEGASKTVKGQEGEQGQYSLIGQYWNGPWGFKVGYAANLESEVNGV
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHCCC
EQKDDDEVLSAQLMYVKNGFVPYIRVGQHDAYDSADKKGFVRVGLEYGF
CCCCCHHHHHEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MDKMFKRTLLGAAVAMASTGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDYE
CCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCEEEEHHHHHHHHHHCCCCCCCCC
NESRIGFRASKDMFDNVNVFMQIESGYVGEDGKGSTLGARDTFLGLQGDWGKVRFGRMLT
CCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHHHH
PLYEIVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIARYDSPAFGGLTFNISAGRGDVGTK
HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCC
SSNHFGAAAHYNAADIVTFHVGYENNSNFKYDYKTKDTAGKDVDNTFLTDATAYIVGFEL
CCCCCCCEEECCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC
PLPAGFGLAGAYKYTEGASKTVKGQEGEQGQYSLIGQYWNGPWGFKVGYAANLESEVNGV
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHCCC
EQKDDDEVLSAQLMYVKNGFVPYIRVGQHDAYDSADKKGFVRVGLEYGF
CCCCCHHHHHEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA