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The map label for this gene is tcpF [H]

Identifier: 227081014

GI number: 227081014

Start: 856125

End: 857141

Strand: Direct

Name: tcpF [H]

Synonym: VCM66_0794

Alternate gene names: 227081014

Gene position: 856125-857141 (Clockwise)

Preceding gene: 227081013

Following gene: 227081015

Centisome position: 29.6

GC content: 34.81

Gene sequence:

>1017_bases
ATGAGATATAAAAAAACCTTAATGTTATCAATCATGATTACATCATTTAACTCATTTGCATTTAATGATAATTATAGTTC
AACCAGTACGGTTTATGCTACGTCTAATGAAGCTACGGATTCAAGGGGGAGTGAGCACCTTAGATACCCTTATTTAGAGT
GTATCAAAATCGGTATGAGTAGAGATTATCTTGAAAACTGTGTGAAAGTATCTTTTCCAACCTCTCAAGATATGTTTTAT
GACGCATACCCATCGACAGAATCTGACGGTGCTAAGACAAGAACAAAAGAAGATTTCTCTGCTCGGCTTTTAGCTGGTGA
TTATGATAGTTTACAGAAATTGTATATAGATTTTTATCTTGCTCAAACGACTTTCGATTGGGAAATACCGACAAGGGATC
AAATTGAGACACTAGTTAATTATGCTAATGAAGGTAAATTGTCTACGGCACTTAATCAAGAGTATATTACAGGTCGATTT
CTTACAAAAGAAAATGGTCGATATGATATTGTGAATGTTGGTGGTGTTCCAGATAATACTCCAGTTAAACTACCAGCTAT
TGTTTCTAAACGCGGACTAATGGGTACAACTTCTGTAGTTAATGCAATTCCCAATGAAATTTATCCTCATATCAAAGTTT
ATGAAGGGACTCTTAGTCGTTTAAAACCTGGTGGTGCAATGATCGCAGTATTAGAATATGACGTAAGTGAATTAAGTAAG
CACGGGTATACCAATCTGTGGGATGTGCAGTTTAAGGTTCTTGTTGGAGTTCCACATGCAGAAACAGGAGTTATCTATGA
CCCTGTTTATGAAGAAACTGTCAAACCATATCAGCCTAGTGACAACTTAACGGGTAAGAAGTTGTATAATGTATCTACAA
ATGACATGCATAATGGTTACAAGTGGTCAAATACTATGTTCTCAAATTCTAATTATAAAACGCAAATATTATTAACTAAA
GGAGATGGAAGTGGTGTGAAACTGTATAGCAAAGCATATTCAGAGAACTTTAAATAA

Upstream 100 bases:

>100_bases
AAATATTTCACTAATAACGTTGGCGTTGTCTGTGATTTGGATCTTCGGTGCGATCTTTTCGCTCGTTGATAAACTAAGTT
CATCTTTATAGTGAGGATAT

Downstream 100 bases:

>100_bases
AATAGATAAGATAACAGCCACATTCGTGGCTGTTATCTTATCTCAAAAAACATAAAATAACATGAGTTACTTTATGTTTT
TCTTATGTAATACGTCTGTA

Product: toxin co-regulated pilus biosynthesis protein F

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpF [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFY
DAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRF
LTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSDNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTK
GDGSGVKLYSKAYSENFK

Sequences:

>Translated_338_residues
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFY
DAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRF
LTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSDNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTK
GDGSGVKLYSKAYSENFK
>Mature_338_residues
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFY
DAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRF
LTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSDNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTK
GDGSGVKLYSKAYSENFK

Specific function: Involved in TCP pilus biogenesis. May be a channel protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009405 [H]

Pfam domain/function: PF06340 TcpF [H]

EC number: NA

Molecular weight: Translated: 38185; Mature: 38185

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS
CCCHHEEEEEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCC
RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
HHHHHHHEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHEEEE
AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
EEEEEECCCCCHHHHHHHHHHCCCCCEEHHHCCHHEEEEEEECCCCCEEEEEECCCCCCC
PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK
CEECHHHHCCCCCCCHHHHHHHCCHHHCCCEEEEECHHHHCCCCCEEEEEEECCHHHHHH
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSDNLTGKKLYNVSTNDMHNGY
CCCCCEEEEEEEEEEECCCCCCCCEECCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCE
KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
EECCEEECCCCEEEEEEEECCCCCCEEEEEHHHCCCCC
>Mature Secondary Structure
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS
CCCHHEEEEEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCC
RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
HHHHHHHEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHEEEE
AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
EEEEEECCCCCHHHHHHHHHHCCCCCEEHHHCCHHEEEEEEECCCCCEEEEEECCCCCCC
PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK
CEECHHHHCCCCCCCHHHHHHHCCHHHCCCEEEEECHHHHCCCCCEEEEEEECCHHHHHH
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSDNLTGKKLYNVSTNDMHNGY
CCCCCEEEEEEEEEEECCCCCCCCEECCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCE
KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
EECCEEECCCCEEEEEEEECCCCCCEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11179381 [H]