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The map label for this gene is citD [H]

Identifier: 227080976

GI number: 227080976

Start: 811739

End: 812035

Strand: Direct

Name: citD [H]

Synonym: VCM66_0755

Alternate gene names: 227080976

Gene position: 811739-812035 (Clockwise)

Preceding gene: 227080975

Following gene: 227080977

Centisome position: 28.06

GC content: 53.87

Gene sequence:

>297_bases
ATGAAAATTGCCCATCCCGCCTTTGCGGGAACACTGGAATCCAGTGATCTTCAGGTTCGGATTGAACCCAATAACGATGG
CGGTATTGAACTGGTGTTAGACAGTACCGTCGAGCAGCAATTTGGTCATGCGATTCGTCAGGTCGTGCTGCACACCCTCG
ATGCGATGCAAGTACGCGATGCGCTGGTCACCATCGAAGACAAAGGTGCGCTGGATTGTGTGATCCGCGCGCGCGTACAG
GCGGCGGTGATGCGCGCTTGTGATGTTCAGAACATTGAGTGGAGCCAGCTATCATGA

Upstream 100 bases:

>100_bases
CTATGCGGAACATTCGCTACAGACCGCACCGCAACTGTTAGCGGTATGAGGGCGGTGCTGACACTGTTTTATCCAATAAC
TCATTAACAAGGTTGTACCC

Downstream 100 bases:

>100_bases
CCAAACTTCGTCGCAGTATGTTATTTGTGCCGGGCGCGAATGCCGCCATGCTCAGCAACACCTTTATCTATCAACCGGAT
TCGATCATGTTCGATCTGGA

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain [H]

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQQFGHAIRQVVLHTLDAMQVRDALVTIEDKGALDCVIRARVQ
AAVMRACDVQNIEWSQLS

Sequences:

>Translated_98_residues
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQQFGHAIRQVVLHTLDAMQVRDALVTIEDKGALDCVIRARVQ
AAVMRACDVQNIEWSQLS
>Mature_98_residues
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQQFGHAIRQVVLHTLDAMQVRDALVTIEDKGALDCVIRARVQ
AAVMRACDVQNIEWSQLS

Specific function: Covalent carrier of the coenzyme of citrate lyase [H]

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family [H]

Homologues:

Organism=Escherichia coli, GI1786834, Length=94, Percent_Identity=46.8085106382979, Blast_Score=93, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006495
- InterPro:   IPR009662
- ProDom:   PD015389 [H]

Pfam domain/function: PF06857 MdcD [H]

EC number: 4.1.3.6

Molecular weight: Translated: 10768; Mature: 10768

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQQFGHAIRQVVLHTLDAMQVRD
CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ALVTIEDKGALDCVIRARVQAAVMRACDVQNIEWSQLS
HEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQQFGHAIRQVVLHTLDAMQVRD
CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ALVTIEDKGALDCVIRARVQAAVMRACDVQNIEWSQLS
HEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA