| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is fbpA [H]
Identifier: 227080789
GI number: 227080789
Start: 596334
End: 597392
Strand: Direct
Name: fbpA [H]
Synonym: VCM66_0566
Alternate gene names: 227080789
Gene position: 596334-597392 (Clockwise)
Preceding gene: 227080788
Following gene: 227080790
Centisome position: 20.62
GC content: 45.7
Gene sequence:
>1059_bases TTGCGATTGATAAAGGTTATCATTACTAGTCAAAAGGAATACTCAATGAAAAAACTGCTCAGCCTGTCAGCGATAACGCT CAGTGTGCTTGCCCCTTCTGCTTTTGCCGCTCAAGAAGTCAATGTTTACTCTTATCGCCAACCGTTTCTGATTGAGCCGA TGTTTGCTGAATTTACGAAAGAAACTGGCATTAAAGTTAACGTAAAGTTCGCGAAAGAAGGTATCGCTGAAAAGCTTGCT CAAGAAGGCGAATACAGCCCAGCAGATGTGATCTTAACCTCTGAATTCAGTCGTCTGTTTGAGCTGACCGAAAAAGGTTT GACTCAGCCGCTGGATAGCAAAGTGATTGAAGAGAACATTCCGGCTCAGTATCGTGACAGTGGCGATGAGTGGTTTGCCC TGACTCAGCGTACTCGCAGTGTCTATTCTTCACGTGACCGCCTAGGTAAGCTCGGTGATGATTTTGACTATATGGATCTG GCAAAGCCTGAGTTCAAAGGCAAAATCTGTACTCGTAGTGGTAAGCATCCTTACAACATCGCATTAGTTGCTTCCATCAT TGCTAACCACGGTGAAGCTGAAGCAAAAGCTTGGCTAGAAGGCGTTAAAGCGAACCTAGCACGCAAACCGCAAGGCAACG ATCGTGACCAAGTTCGCGCGATCAAAGAAGGTCTGTGTGATGTCTCATTGGGTAACAGCTACTACCTAGGCGCCATGCTG AATGATCAAGAGCAGAAATCTTGGGCTGAAGCGGTGTACATCAACTTCCCAGGTCAAAATGTGCAAGGAACACACGTTAA CGTGAGTGGTATGGCGATGGCTAAATACTCACCTAACCGTGAAAACGCGCAGAAACTGATGGAGTTTTTGACTGGTGAAA CGGCTCAGAAAATGTATGCAGAAGTGAACTACGAATACCCAGTCAAACCGGGTGTACAACGTTCTGCATTGGTGGAGTCT TGGGGCGAGTTTAAAGCCGACAGTCTGCCACTGGAAAAAATTGCAGATAACAATGCTGCAGCGATCAAATTGATCGATGA AGTCAAATTTGACCTGTAA
Upstream 100 bases:
>100_bases GTGAAATATCATTTTACAAATTGAACCGAACAAAACCTGCCGTAAAGGCGGGTTTTGTTTTTTTGCCAATTGTTTTCTTA TTGAACATTCCTATAATACA
Downstream 100 bases:
>100_bases GTAAAATCAGGGGTATAACGTACCCCTATTTTATTTGAGGGATGCAGTATCTGCTTGCTGTTCAAGCCTTATACTGATAG GCGATGAAAGAAAAATATTT
Product: iron(III) ABC transporter, periplasmic iron-compound-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MRLIKVIITSQKEYSMKKLLSLSAITLSVLAPSAFAAQEVNVYSYRQPFLIEPMFAEFTKETGIKVNVKFAKEGIAEKLA QEGEYSPADVILTSEFSRLFELTEKGLTQPLDSKVIEENIPAQYRDSGDEWFALTQRTRSVYSSRDRLGKLGDDFDYMDL AKPEFKGKICTRSGKHPYNIALVASIIANHGEAEAKAWLEGVKANLARKPQGNDRDQVRAIKEGLCDVSLGNSYYLGAML NDQEQKSWAEAVYINFPGQNVQGTHVNVSGMAMAKYSPNRENAQKLMEFLTGETAQKMYAEVNYEYPVKPGVQRSALVES WGEFKADSLPLEKIADNNAAAIKLIDEVKFDL
Sequences:
>Translated_352_residues MRLIKVIITSQKEYSMKKLLSLSAITLSVLAPSAFAAQEVNVYSYRQPFLIEPMFAEFTKETGIKVNVKFAKEGIAEKLA QEGEYSPADVILTSEFSRLFELTEKGLTQPLDSKVIEENIPAQYRDSGDEWFALTQRTRSVYSSRDRLGKLGDDFDYMDL AKPEFKGKICTRSGKHPYNIALVASIIANHGEAEAKAWLEGVKANLARKPQGNDRDQVRAIKEGLCDVSLGNSYYLGAML NDQEQKSWAEAVYINFPGQNVQGTHVNVSGMAMAKYSPNRENAQKLMEFLTGETAQKMYAEVNYEYPVKPGVQRSALVES WGEFKADSLPLEKIADNNAAAIKLIDEVKFDL >Mature_352_residues MRLIKVIITSQKEYSMKKLLSLSAITLSVLAPSAFAAQEVNVYSYRQPFLIEPMFAEFTKETGIKVNVKFAKEGIAEKLA QEGEYSPADVILTSEFSRLFELTEKGLTQPLDSKVIEENIPAQYRDSGDEWFALTQRTRSVYSSRDRLGKLGDDFDYMDL AKPEFKGKICTRSGKHPYNIALVASIIANHGEAEAKAWLEGVKANLARKPQGNDRDQVRAIKEGLCDVSLGNSYYLGAML NDQEQKSWAEAVYINFPGQNVQGTHVNVSGMAMAKYSPNRENAQKLMEFLTGETAQKMYAEVNYEYPVKPGVQRSALVES WGEFKADSLPLEKIADNNAAAIKLIDEVKFDL
Specific function: A major iron-binding protein involved in Fe(3+) uptake, probably part of a periplasmic ABC transporter complex futA1A2BC (TC 3.A.1.10.2) involved in Fe(3+) ion import (ferric iron). This protein and futA2 (slr0531) may be subunit proteins that have redund
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cellular thylakoid membrane; Lipid-anchor (Potential). Cell membrane; Lipid-anchor (Potential). Note=Localization to the periplasm was not detected in PubMed:12368463 [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 39369; Mature: 39369
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLIKVIITSQKEYSMKKLLSLSAITLSVLAPSAFAAQEVNVYSYRQPFLIEPMFAEFTK CCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCEECHHHHHHHH ETGIKVNVKFAKEGIAEKLAQEGEYSPADVILTSEFSRLFELTEKGLTQPLDSKVIEENI HCCCEEEEEHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHCCCCHHHHHHHHCC PAQYRDSGDEWFALTQRTRSVYSSRDRLGKLGDDFDYMDLAKPEFKGKICTRSGKHPYNI CCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEECCCCCCCCHH ALVASIIANHGEAEAKAWLEGVKANLARKPQGNDRDQVRAIKEGLCDVSLGNSYYLGAML HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEEEE NDQEQKSWAEAVYINFPGQNVQGTHVNVSGMAMAKYSPNRENAQKLMEFLTGETAQKMYA CCHHHHHHHCEEEEECCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHCCHHHHHHHH EVNYEYPVKPGVQRSALVESWGEFKADSLPLEKIADNNAAAIKLIDEVKFDL HCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEHHHHCCC >Mature Secondary Structure MRLIKVIITSQKEYSMKKLLSLSAITLSVLAPSAFAAQEVNVYSYRQPFLIEPMFAEFTK CCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCEECHHHHHHHH ETGIKVNVKFAKEGIAEKLAQEGEYSPADVILTSEFSRLFELTEKGLTQPLDSKVIEENI HCCCEEEEEHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHCCCCHHHHHHHHCC PAQYRDSGDEWFALTQRTRSVYSSRDRLGKLGDDFDYMDLAKPEFKGKICTRSGKHPYNI CCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEECCCCCCCCHH ALVASIIANHGEAEAKAWLEGVKANLARKPQGNDRDQVRAIKEGLCDVSLGNSYYLGAML HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEEEE NDQEQKSWAEAVYINFPGQNVQGTHVNVSGMAMAKYSPNRENAQKLMEFLTGETAQKMYA CCHHHHHHHCEEEEECCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHCCHHHHHHHH EVNYEYPVKPGVQRSALVESWGEFKADSLPLEKIADNNAAAIKLIDEVKFDL HCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]