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The map label for this gene is yjfR [C]

Identifier: 227080588

GI number: 227080588

Start: 376468

End: 377646

Strand: Direct

Name: yjfR [C]

Synonym: VCM66_0360

Alternate gene names: 227080588

Gene position: 376468-377646 (Clockwise)

Preceding gene: 227080586

Following gene: 227080591

Centisome position: 13.02

GC content: 48.94

Gene sequence:

>1179_bases
ATGTCAGAAACGGCCATTCAGACTAAAACACAAGCACGTCAACGCAAGGTGTTTGCTCACCACCATGTTCAACACTATCG
CTCGCAGTTAGAGCGCCGGATCTCCCACTCACCTCAATTTCGAGAGGGCAAAGTGATCAACGCTATGCCTCATATTACCG
CTACACCATCATGGTGGCAGACAGCTTGGAGTTACTTTGGGGGGAGAGCTCAGCTCAAGCCTAATGCTCAGTTGCCCGTA
GCACCTCTCAACCTGCAAGCGTTGCAAACACGCAGCAAGGCACTTCGAGTCACTTGGCTTGGCCACTCTAGTTTGTTTAT
TGAAGTCGATGGGCTACGAGTATTGACCGATCCGGTGTTTGATTACGCTTCGCCTTGGATTGCGAAAGCGTGGTTTGCCA
GAAACCTGCCTAATAGTGGTGTGCGGGAGCAGTTACCACTGCCGGATGTGATTGTGATCTCTCACGATCATTATGACCAT
TTAGAGCAGGCCAGTGTTGTCTATTATGCCGCGCATTCGGTCACCTTCTATGTTCCGCTGGGTGTCGGGCAGCATTTGAT
TCGCTGGGGAGTCTCACCTGAACGAATTATCGAATTCGATTGGTGGGAGCAGATAAAACGAGAAGGCGTCGAGTTTATTT
GTACTCCAGCTAATCACAATTCAGGACGTTATTATCTCGATCATAATGCGACCTTGTGGTGTTCATGGGTCATAAAAGGC
CATCAAGAAACACTCTATTTCAGTGGTGATAGTGCCTATGATACACATTTTGCAAAGATTGCTGAGCGCTGTGGGCCGAT
TGATTTGGCTTGTCTAGAAGTGGCCGCCGATGTTAAGCAGCACCAAGGTTATCCCGTTGAAAATTGGGGACACATGCAGG
CGAAACACACAGTTCAAGCCTTTCGCGACTTACAAGCTAAAAAACTGCTGCCGATTCACTGGGCGACTTATGAGTTGTTT
ACCCACCAATGGGATGAGCCGATTGCCGATCTGGTTAAGCATTGCCAAGAGCAGTCGATCACTTTGCTAACCCCTATGGC
AGGAGAAAGCCTAACCATGGCAAACCACAGCGCAAGCCACGCTTGGTGGCAAGGTTTAGAAACTGAGCCCATGAGTGGTG
CTCGATATTGGCAAATGGGCTTAGCGTGTTCTTTATTATTGCTGCTGATGGTGGTGTAA

Upstream 100 bases:

>100_bases
TGCCATTGAAAGTTCATTTTTCCTACCGATTTGGTCATAAAACAGACATGCAGCAGGGTTTAACTAAACGCACTGTCAGA
GTGATAGGGCTTATGCTGGT

Downstream 100 bases:

>100_bases
ATGTCACCCCCAGTGCTCGGGGATAGCAGAGAAAACAAAACCGGACAAAAGTGTCCGGTTTAATCAAGATCATTGAGAGC
GATGAACTAACAGTGGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MSETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGKVINAMPHITATPSWWQTAWSYFGGRAQLKPNAQLPV
APLNLQALQTRSKALRVTWLGHSSLFIEVDGLRVLTDPVFDYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDH
LEQASVVYYAAHSVTFYVPLGVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPANHNSGRYYLDHNATLWCSWVIKG
HQETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAADVKQHQGYPVENWGHMQAKHTVQAFRDLQAKKLLPIHWATYELF
THQWDEPIADLVKHCQEQSITLLTPMAGESLTMANHSASHAWWQGLETEPMSGARYWQMGLACSLLLLLMVV

Sequences:

>Translated_392_residues
MSETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGKVINAMPHITATPSWWQTAWSYFGGRAQLKPNAQLPV
APLNLQALQTRSKALRVTWLGHSSLFIEVDGLRVLTDPVFDYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDH
LEQASVVYYAAHSVTFYVPLGVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPANHNSGRYYLDHNATLWCSWVIKG
HQETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAADVKQHQGYPVENWGHMQAKHTVQAFRDLQAKKLLPIHWATYELF
THQWDEPIADLVKHCQEQSITLLTPMAGESLTMANHSASHAWWQGLETEPMSGARYWQMGLACSLLLLLMVV
>Mature_391_residues
SETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGKVINAMPHITATPSWWQTAWSYFGGRAQLKPNAQLPVA
PLNLQALQTRSKALRVTWLGHSSLFIEVDGLRVLTDPVFDYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDHL
EQASVVYYAAHSVTFYVPLGVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPANHNSGRYYLDHNATLWCSWVIKGH
QETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAADVKQHQGYPVENWGHMQAKHTVQAFRDLQAKKLLPIHWATYELFT
HQWDEPIADLVKHCQEQSITLLTPMAGESLTMANHSASHAWWQGLETEPMSGARYWQMGLACSLLLLLMVV

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To K.pneumoniae romA [H]

Homologues:

Organism=Homo sapiens, GI170932483, Length=324, Percent_Identity=31.4814814814815, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI170932481, Length=324, Percent_Identity=31.4814814814815, Blast_Score=149, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17543104, Length=265, Percent_Identity=29.811320754717, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17543100, Length=261, Percent_Identity=28.3524904214559, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17543102, Length=261, Percent_Identity=28.3524904214559, Blast_Score=122, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI25148824, Length=261, Percent_Identity=28.3524904214559, Blast_Score=121, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6325154, Length=243, Percent_Identity=32.5102880658436, Blast_Score=114, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44942; Mature: 44810

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGKVINAMPHITATPSWWQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHH
TAWSYFGGRAQLKPNAQLPVAPLNLQALQTRSKALRVTWLGHSSLFIEVDGLRVLTDPVF
HHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCEEEEEEECCCEEEEEECCEEEEHHHHH
DYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDHLEQASVVYYAAHSVTFYVPL
HHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCEEEEEEEEEEEEEEEC
GVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPANHNSGRYYLDHNATLWCSWVIKG
CCCHHHHHCCCCHHHEEECHHHHHHHHCCCEEEEECCCCCCCEEEEECCCEEEEEEEEEC
HQETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAADVKQHQGYPVENWGHMQAKHTVQA
CCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
FRDLQAKKLLPIHWATYELFTHQWDEPIADLVKHCQEQSITLLTPMAGESLTMANHSASH
HHHHHHHCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCH
AWWQGLETEPMSGARYWQMGLACSLLLLLMVV
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGKVINAMPHITATPSWWQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHH
TAWSYFGGRAQLKPNAQLPVAPLNLQALQTRSKALRVTWLGHSSLFIEVDGLRVLTDPVF
HHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCEEEEEEECCCEEEEEECCEEEEHHHHH
DYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDHLEQASVVYYAAHSVTFYVPL
HHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCEEEEEEEEEEEEEEEC
GVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPANHNSGRYYLDHNATLWCSWVIKG
CCCHHHHHCCCCHHHEEECHHHHHHHHCCCEEEEECCCCCCCEEEEECCCEEEEEEEEEC
HQETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAADVKQHQGYPVENWGHMQAKHTVQA
CCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
FRDLQAKKLLPIHWATYELFTHQWDEPIADLVKHCQEQSITLLTPMAGESLTMANHSASH
HHHHHHHCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCH
AWWQGLETEPMSGARYWQMGLACSLLLLLMVV
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]