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The map label for this gene is nudC

Identifier: 227080543

GI number: 227080543

Start: 334185

End: 334994

Strand: Direct

Name: nudC

Synonym: VCM66_0315

Alternate gene names: 227080543

Gene position: 334185-334994 (Clockwise)

Preceding gene: 227080541

Following gene: 227080544

Centisome position: 11.55

GC content: 50.37

Gene sequence:

>810_bases
ATGATCCGACTGCAAGCAATCAGGAGAAGCAGAGTGGAAAAGAGTGACGGCAAGAACGCTTATTGGTGTGTTGTTTCAGG
CAGCGATCTTTGGCTGGTGGATGGCCAAATTCCTTATGGCAGCGCAGAGCAGTGGGATCTGCCACAAGAGAAGGCGATCT
TGGTGGATCGTTACCAAAACTCCCCTGTCTACTGGCTGAATGCTGCAGATATTGAGCAGGATCGTCCGCTCACTTCATTA
CGTGAGTTATTGGGTGTGGATGAGGCGCTGTTTCTTGCTGCAAGCAAAGCGGTGCAATATGGCCATATGAGCCAAACCAT
ACGATTTTGTCCGCAATGTGGGGGGCGTAACTATCTCAATCATCAGCAACTGGCAATGCAGTGCCACGATTGCCGAACCC
TGCACTATCCGCGTATTTTTCCCTGCATTATTGTTGCCGTACGTAAACAGCAGCAAATTTTGCTGGCGCAGCACCCACGC
CATCGCAATGGTATGTACACCGTGATTGCCGGCTTTGTTGAGGTAGGCGAGACGCTTGAACAGTGTGTTGCGCGTGAAGT
GTTGGAAGAGACCGGTATCGTCGTGACCAATATTCGCTACTTTGGCAGCCAACCTTGGGCATTTCCGTCGAGTATGATGA
TGGCGTTTTTAGCCGATTATGACACTGGTGAGCTTAAACCCGATTACAGTGAATTGAGTGATGCCAATTGGTTTGGTATC
GAAAACCTTCCTCCTGTTGCACCGCGAGGGACGATTGCCCGCGCTTTGATTGAGCAGACGTTGGCCGATATTGCCCAAGA
TCAGGCTTAA

Upstream 100 bases:

>100_bases
TTAGTAATATCAATAAGATATCACTACTGCCCTCACAAAAAGTTATAGTCAATAATTCTTGTGCTGACAAATTGTGGTGT
GAATTTAGATTGCCAGTAAA

Downstream 100 bases:

>100_bases
AAGGCAAAAAAAAACCCTCCGGTTAAGGAGGGGGTAAGTAAGATGTCGTTATGAGATGCTGAGTCGAGGACTCAGTTTAT
GATTATAGTTTTCGCTAGCG

Product: NADH pyrophosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MIRLQAIRRSRVEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQWDLPQEKAILVDRYQNSPVYWLNAADIEQDRPLTSL
RELLGVDEALFLAASKAVQYGHMSQTIRFCPQCGGRNYLNHQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPR
HRNGMYTVIAGFVEVGETLEQCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLADYDTGELKPDYSELSDANWFGI
ENLPPVAPRGTIARALIEQTLADIAQDQA

Sequences:

>Translated_269_residues
MIRLQAIRRSRVEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQWDLPQEKAILVDRYQNSPVYWLNAADIEQDRPLTSL
RELLGVDEALFLAASKAVQYGHMSQTIRFCPQCGGRNYLNHQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPR
HRNGMYTVIAGFVEVGETLEQCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLADYDTGELKPDYSELSDANWFGI
ENLPPVAPRGTIARALIEQTLADIAQDQA
>Mature_269_residues
MIRLQAIRRSRVEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQWDLPQEKAILVDRYQNSPVYWLNAADIEQDRPLTSL
RELLGVDEALFLAASKAVQYGHMSQTIRFCPQCGGRNYLNHQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPR
HRNGMYTVIAGFVEVGETLEQCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLADYDTGELKPDYSELSDANWFGI
ENLPPVAPRGTIARALIEQTLADIAQDQA

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain

Homologues:

Organism=Homo sapiens, GI13899267, Length=185, Percent_Identity=35.6756756756757, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI50593112, Length=169, Percent_Identity=31.3609467455621, Blast_Score=88, Evalue=9e-18,
Organism=Escherichia coli, GI48994995, Length=251, Percent_Identity=47.4103585657371, Blast_Score=239, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI212645999, Length=185, Percent_Identity=30.2702702702703, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71986510, Length=185, Percent_Identity=30.2702702702703, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321371, Length=155, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NUDC_VIBC3 (A5F3M9)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F3M9
- SMR:   A5F3M9
- STRING:   A5F3M9
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A2733
- eggNOG:   COG2816
- HOGENOM:   HBG736436
- OMA:   WLAFSSA
- ProtClustDB:   PRK00241
- BioCyc:   VCHO345073:VC0395_A2733-MONOMER
- HAMAP:   MF_00297
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376
- Gene3D:   G3DSA:3.90.79.10

Pfam domain/function: PF00293 NUDIX; PF09297 zf-NADH-PPase; SSF55811 NUDIX_hydrolase

EC number: =3.6.1.22

Molecular weight: Translated: 30478; Mature: 30478

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS51462 NUDIX; PS00893 NUDIX_BOX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLQAIRRSRVEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQWDLPQEKAILVDRYQN
CCCHHHHHHHHHHCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCHHEEEEEECCC
SPVYWLNAADIEQDRPLTSLRELLGVDEALFLAASKAVQYGHMSQTIRFCPQCGGRNYLN
CCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRNGMYTVIAGFVEVGETLE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
QCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLADYDTGELKPDYSELSDANWFGI
HHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC
ENLPPVAPRGTIARALIEQTLADIAQDQA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRLQAIRRSRVEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQWDLPQEKAILVDRYQN
CCCHHHHHHHHHHCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCHHEEEEEECCC
SPVYWLNAADIEQDRPLTSLRELLGVDEALFLAASKAVQYGHMSQTIRFCPQCGGRNYLN
CCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRNGMYTVIAGFVEVGETLE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
QCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLADYDTGELKPDYSELSDANWFGI
HHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC
ENLPPVAPRGTIARALIEQTLADIAQDQA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA