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The map label for this gene is ybfI [H]

Identifier: 227080414

GI number: 227080414

Start: 183857

End: 184669

Strand: Reverse

Name: ybfI [H]

Synonym: VCM66_0180

Alternate gene names: 227080414

Gene position: 184669-183857 (Counterclockwise)

Preceding gene: 227080415

Following gene: 227080413

Centisome position: 6.38

GC content: 49.82

Gene sequence:

>813_bases
TTGGTCTCTATGGATACAGTGAATTACCGCCCCAGCGCTTACCCCGCGATCAATCTGATTGAAGCAGATTATCGCCAGTT
TGCGTTTGAGCGTCACTATCATCTGGATATCCATATCGGTCTCATCACCCAAGGTGTACAACGTTTTTATCACCAAGGGG
CTTGGCATCAAGTGGGACAAGGTGGCGTGGTATTGATGTCACCCGATGAGTTGCATGATGGCCACGCGCACAGTAATACG
GGCTATCAAGTACAAGTGTTCTCCATTGAACCTGAATGGTTACAGCAGACGCTCGAAGCCAACCAGATTGAGCAGGTGAT
CGGCTTTGAGCAGTTGATTGTACAAGACCCAACCCTATTTCACTCCTTGCAGCAACTTCACCATTTGCTGCGACAGGACA
ACCTCAGCCAGCTCGCCAAAGATTGCTTACCTTATCAAGGCTTTGCTCCGCTGCTTGAGCGTTATAGCTACCTAAAACAA
CCCACCGTCAAACCGCTTGGCCAACACAATCTCGCCCTACTCAAAGAGTGGGTACTCAGCCAGCTTGACCAACCGATCCG
GCTCGAACAGTTAGCGCAATTGTGCCAACTCTCCCCAACTCAATTTCAGCGCCATTTTAAAGCGCAAACGGGGCTCACGC
CTTACGCTTGGTTACGACGGCTACGCCTAGAGCAAGCAATGAAACTGCTGCAAAGTGGCAAACCAGGCACAGATGTCGCG
TATCAGGTCGGCTTTTATGATCAGGCCCATTTCAGTAAAGCCTTCAAAGCCACTTATGGCCTTTCGCCTTCTTTGATCAC
TCGCTTTTCTTAA

Upstream 100 bases:

>100_bases
TCGCACCTCATTTTTCCCACCCACGCGCAGAGGCACTGATCATTTTTTACAAGACAAGCTCTGACTCACCGCTTAAGATT
TTGGTAACTTAGCCTACTTT

Downstream 100 bases:

>100_bases
CCACGCTGTCAAAAATTTACAAGCTCCTCGCGCTCACCGCGCGGCATACTCCGTGAATAATGTGAGGAGAAAGCATGAAC
GAAATGTCCATTTTAGCCAC

Product: transcriptional regulator, AraC/XylS family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MVSMDTVNYRPSAYPAINLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMSPDELHDGHAHSNT
GYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ
PTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVA
YQVGFYDQAHFSKAFKATYGLSPSLITRFS

Sequences:

>Translated_270_residues
MVSMDTVNYRPSAYPAINLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMSPDELHDGHAHSNT
GYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ
PTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVA
YQVGFYDQAHFSKAFKATYGLSPSLITRFS
>Mature_270_residues
MVSMDTVNYRPSAYPAINLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMSPDELHDGHAHSNT
GYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ
PTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVA
YQVGFYDQAHFSKAFKATYGLSPSLITRFS

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=281, Percent_Identity=29.1814946619217, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31096; Mature: 31096

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSMDTVNYRPSAYPAINLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHCCHHHHCCC
GGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLF
CCEEEECCHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
HSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQHNLALLKEWVLS
HHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
QLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVA
HCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCE
YQVGFYDQAHFSKAFKATYGLSPSLITRFS
EEECCCCHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MVSMDTVNYRPSAYPAINLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHCCHHHHCCC
GGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLF
CCEEEECCHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
HSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQHNLALLKEWVLS
HHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
QLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVA
HCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCE
YQVGFYDQAHFSKAFKATYGLSPSLITRFS
EEECCCCHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]