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The map label for this gene is rbpB [H]

Identifier: 227080393

GI number: 227080393

Start: 150012

End: 150470

Strand: Reverse

Name: rbpB [H]

Synonym: VCM66_0158

Alternate gene names: 227080393

Gene position: 150470-150012 (Counterclockwise)

Preceding gene: 227080394

Following gene: 227080391

Centisome position: 5.2

GC content: 44.44

Gene sequence:

>459_bases
ATGAAATCTGACAAATCGATGTTATGGATTGCCCTGCTTGCCGTTATTGGTGCCGGGATTTTATCGCAATTGACTCTACA
CTCTTCTTTCGCTTTTCTAATTGGTGTGGTTGCAACGGCTTTAATTTGCAAACTTTCTACTCACCCCACTCTTTCATCAA
GCGAAGATGAAGAGGCGTCTTCCACCACGAAAACACTCTATGTGGGCAATCTGCCCTATAAAGCCAATGAATCGCACGTT
AAAGAGCTGTTCGCCGAGTTTGGCGAGGTCTTTGCGGTGCGTTTAATGAAAGACAAACGAACAGGTAAACGGCGAGGGTT
TGGATTTGTGGTGATAGCCGCAAGCCAAGCTCAAACAGCCATTGATGCACTCAACGAAAAGGAATATATGCAGCGAACGT
TAAAAGTTCGCATTGCGAATGATCCTAAATCGGATGAAGAAATGGCTGAACAGGATTAA

Upstream 100 bases:

>100_bases
TGGAAAAATATCAAGCATATACGTAAGATTCCTGTGTCTATTTTGTTAATTCATCGATAGACCGTGAATCTTCTTTCTCT
CTGATGCGTAGTAATTCAAT

Downstream 100 bases:

>100_bases
AACCTAACTGTTCAAGCTTTATGTTCAGCGCACTTTCCTCCCATGGTGGTGCGCTTGCATAAATTCGATGCTTTTGCTTT
GCACCAACCGCTTGCTCTAT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICKLSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHV
KELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQD

Sequences:

>Translated_152_residues
MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICKLSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHV
KELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQD
>Mature_152_residues
MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICKLSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHV
KELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQD

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=94, Percent_Identity=36.1702127659575, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI4557493, Length=94, Percent_Identity=36.1702127659575, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI238859597, Length=80, Percent_Identity=38.75, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17137710, Length=90, Percent_Identity=38.8888888888889, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 16715; Mature: 16715

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICKLSTHPTLSSSEDEEAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
STTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTA
CHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
IDALNEKEYMQRTLKVRIANDPKSDEEMAEQD
HHHHCHHHHHHHHHHHEECCCCCCHHHHHCCC
>Mature Secondary Structure
MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICKLSTHPTLSSSEDEEAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
STTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTA
CHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
IDALNEKEYMQRTLKVRIANDPKSDEEMAEQD
HHHHCHHHHHHHHHHHEECCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]