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The map label for this gene is yrdA [H]

Identifier: 227080295

GI number: 227080295

Start: 52756

End: 53310

Strand: Reverse

Name: yrdA [H]

Synonym: VCM66_0058

Alternate gene names: 227080295

Gene position: 53310-52756 (Counterclockwise)

Preceding gene: 227080303

Following gene: 227080289

Centisome position: 1.84

GC content: 47.57

Gene sequence:

>555_bases
ATGATGAGTTCAATTCGTAGCTACAAAGGCATAGTGCCCAAGCTTGGTGAAGGGGTTTATGTAGATAGCAGTGCTGTGCT
TGTGGGTGATATAGAACTGGGCGACGATGCCAGTATTTGGCCTTTAGTGGCAGCACGGGGCGATGTTAACCATATTCGGA
TTGGTAAACGCACCAATATTCAAGATGGTTCGGTACTGCATGTCACTCACAAAAATGCCGAAAACCCGAATGGGTATCCG
TTATGCATTGGGGATGATGTGACCGTTGGCCATAAGGTTATGCTGCACGGCTGCACCATTCATGATCGAGTTCTCGTCGG
CATGGGGTCTATCGTGTTGGATGGTGCGGTGATTGAAAATGATGTCATGATCGGTGCAGGAAGTTTAGTTCCGCCCGGTA
AAAGGCTCGAAGGTGGCTTTCTGTACATGGGTAGCCCGGTCAAGCAAGCACGTCCTCTCAATGATAAGGAGCGTGCTTTT
CTCGTAAAATCGTCCAGTAATTATGTTCAGAGTAAGAATGACTATCTGAATGACGTTAAAACCGTTCGCGAGTGA

Upstream 100 bases:

>100_bases
TTAAAGTTTTCGAGCACTTGGTGATGTTTTAGGCAGAACAGGCTATTTGTTAATGATTAAGCCATCTACTATACCTACCA
CTTGCTTATAAAAGGGTGAA

Downstream 100 bases:

>100_bases
TCTCAATTTGGCCTAGAAAGTTAAACATTTCATTTTCAATCGCCTGTTCGGCGAGTTCCTCTAGGTCAAAACGCCACTCA
CTGAATGCCGTCATCACGTG

Product: carbonic anhydrase, family 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MMSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVAARGDVNHIRIGKRTNIQDGSVLHVTHKNAENPNGYP
LCIGDDVTVGHKVMLHGCTIHDRVLVGMGSIVLDGAVIENDVMIGAGSLVPPGKRLEGGFLYMGSPVKQARPLNDKERAF
LVKSSSNYVQSKNDYLNDVKTVRE

Sequences:

>Translated_184_residues
MMSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVAARGDVNHIRIGKRTNIQDGSVLHVTHKNAENPNGYP
LCIGDDVTVGHKVMLHGCTIHDRVLVGMGSIVLDGAVIENDVMIGAGSLVPPGKRLEGGFLYMGSPVKQARPLNDKERAF
LVKSSSNYVQSKNDYLNDVKTVRE
>Mature_184_residues
MMSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVAARGDVNHIRIGKRTNIQDGSVLHVTHKNAENPNGYP
LCIGDDVTVGHKVMLHGCTIHDRVLVGMGSIVLDGAVIENDVMIGAGSLVPPGKRLEGGFLYMGSPVKQARPLNDKERAF
LVKSSSNYVQSKNDYLNDVKTVRE

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=177, Percent_Identity=63.8418079096045, Blast_Score=243, Evalue=7e-66,
Organism=Escherichia coli, GI1787667, Length=186, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87081681, Length=168, Percent_Identity=33.9285714285714, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19825; Mature: 19825

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVAARGDVNHIRIGKRTNI
CCCCCCHHCCCCCCCCCCEEECCCEEEEEEEEECCCCCEEEEEECCCCCCEEEECCCCCC
QDGSVLHVTHKNAENPNGYPLCIGDDVTVGHKVMLHGCTIHDRVLVGMGSIVLDGAVIEN
CCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEECCCEEECCEEEEC
DVMIGAGSLVPPGKRLEGGFLYMGSPVKQARPLNDKERAFLVKSSSNYVQSKNDYLNDVK
CEEEECCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHH
TVRE
HHCC
>Mature Secondary Structure
MMSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVAARGDVNHIRIGKRTNI
CCCCCCHHCCCCCCCCCCEEECCCEEEEEEEEECCCCCEEEEEECCCCCCEEEECCCCCC
QDGSVLHVTHKNAENPNGYPLCIGDDVTVGHKVMLHGCTIHDRVLVGMGSIVLDGAVIEN
CCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEECCCEEECCEEEEC
DVMIGAGSLVPPGKRLEGGFLYMGSPVKQARPLNDKERAFLVKSSSNYVQSKNDYLNDVK
CEEEECCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHH
TVRE
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]