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The map label for this gene is rnpA

Identifier: 227080243

GI number: 227080243

Start: 4123

End: 4479

Strand: Reverse

Name: rnpA

Synonym: VCM66_0006

Alternate gene names: 227080243

Gene position: 4479-4123 (Counterclockwise)

Preceding gene: 227080244

Following gene: 227080242

Centisome position: 0.15

GC content: 44.82

Gene sequence:

>357_bases
TTGAGTACGTACGCATTCAATCGGGAGTTACGTTTGTTAACTCCCGAACATTATCAAAAAGTCTTCCAGCAAGCTCACAG
TGCTGGTTCTCCTCATCTCACAATCATCGCTCGCGCTAATAACCTTTCTCATCCTCGTTTGGGACTCGCGGTTCCTAAAA
AGCAGATCAAAACTGCCGTCGGCCGTAATCGATTCAAACGTATTTGCAGAGAAAGCTTTCGCTTACATCAAAATCAACTG
GCTAACAAAGATTTTGTTGTCATCGCCAAAAAGAGCGCGCAAGATTTGAGCAATGAAGAACTGTTTAACTTGCTTGGCAA
ACTATGGCAACGCCTCTCTCGCCCTTCTCGTGGTTAG

Upstream 100 bases:

>100_bases
CGGTTTCCGTGCTCGCATGGCGACTGCGAACGGTCGTAAAGTTCTGAATGCACGTCGTGCAAAAGGCCGTAAGCGCCTGT
CAAAATAATCTCGAATTATT

Downstream 100 bases:

>100_bases
CCATTGGTATTGTAAAACTTTACCAGTGGTTTATTAGTCCACTTATCGGCCCACGCTGCCGATTCACTCCTACTTGTTCC
ACGTATGCGATAGAAGCGCT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MSTYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSHPRLGLAVPKKQIKTAVGRNRFKRICRESFRLHQNQL
ANKDFVVIAKKSAQDLSNEELFNLLGKLWQRLSRPSRG

Sequences:

>Translated_118_residues
MSTYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSHPRLGLAVPKKQIKTAVGRNRFKRICRESFRLHQNQL
ANKDFVVIAKKSAQDLSNEELFNLLGKLWQRLSRPSRG
>Mature_117_residues
STYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSHPRLGLAVPKKQIKTAVGRNRFKRICRESFRLHQNQLA
NKDFVVIAKKSAQDLSNEELFNLLGKLWQRLSRPSRG

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

Organism=Escherichia coli, GI1790139, Length=118, Percent_Identity=54.2372881355932, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_VIBC3 (A5F483)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F483
- SMR:   A5F483
- STRING:   A5F483
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A2513
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   LVIGKKS
- ProtClustDB:   PRK01732
- BioCyc:   VCHO345073:VC0395_A2513-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13604; Mature: 13473

Theoretical pI: Translated: 11.78; Mature: 11.78

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSHPRLGLAVPKKQIKTAV
CCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
GRNRFKRICRESFRLHQNQLANKDFVVIAKKSAQDLSNEELFNLLGKLWQRLSRPSRG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSHPRLGLAVPKKQIKTAV
CCCCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
GRNRFKRICRESFRLHQNQLANKDFVVIAKKSAQDLSNEELFNLLGKLWQRLSRPSRG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA