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The map label for this gene is ybaF [H]

Identifier: 226950900

GI number: 226950900

Start: 3957345

End: 3958148

Strand: Reverse

Name: ybaF [H]

Synonym: CLM_3915

Alternate gene names: 226950900

Gene position: 3958148-3957345 (Counterclockwise)

Preceding gene: 226950901

Following gene: 226950899

Centisome position: 95.26

GC content: 29.6

Gene sequence:

>804_bases
ATGATAAAGGATATAACAATAGGACAATATATACCAGGAGATTCTTTTGTGCATAAGTTAGATCCAAGAGTTAAGATAAT
CATATCCCTTATATATATAATTGACCTTTTTATAGTTAACAATTTTAAAGGGTATATATTTATAGTGCTATTTACTTTAG
CAGCTATATTAATTTCACAAATAAAATTTAAGTATATATATAAGGGGCTTAAACCTATACTTATATTAGTGATAATTACA
GCCGTTTTAAATTTATTTCTAACACCAGGAGATACCTTATTGTTTAAGTGGAAATTTATTACTATATATAAGGAAGGATT
AAGGTTAGCTATATTTATGGTTCTAAGATTAGTATTTTTAATAATAGGAACATCATTATTAACGCTAACAACTTCTCCTA
TAGAACTTACGGATGGAATAGAAAAATTACTAAATCCATTAAGAAAAATAGGAGTTCCGGCTCATGAACTTGCTATGATG
ATGACTATAGCTCTAAGATTTATACCAACACTTATGGATGAAACTGATAAAATTATGAAAGCACAAATGGCTAGAGGTGC
AGATTTTGAATCAGGTAATTTAATACAAAGAGCTAAAAATTTAATACCTTTACTAGTGCCACTTTTTATTAGTTCATTTA
GGCGAGCAGATGAACTAGCTATGGCAATGGAAGCAAGATGTTATAGGGGAGGAGAAGGAAGAACTAGAATGAAAGAACTT
TCCCTTTCGTCAAGAGATTTTGTAGCAGCAGCATTTACTTCTATTTTAGTTATACTATCTATTTGGAGTAGGATGTGGAC
TTAG

Upstream 100 bases:

>100_bases
AATTAAGAAAAAAAGGTTTTAATTTACCAGACAATATTTATACTATAGAAAAAGCTAAAAAAGAATTATTAAAATCACTT
AAAAGTGAGGGAATTATTAA

Downstream 100 bases:

>100_bases
TGAAAAATATAAAATTGAAACTTGAGTATGATGGAGCAAATTATTGTGGATGGCAAAAACAAAAAAATGAAAAGTTTATT
ACGTTACAAGGTACTTTAGA

Product: cobalt transport permease, CbiQ family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MIKDITIGQYIPGDSFVHKLDPRVKIIISLIYIIDLFIVNNFKGYIFIVLFTLAAILISQIKFKYIYKGLKPILILVIIT
AVLNLFLTPGDTLLFKWKFITIYKEGLRLAIFMVLRLVFLIIGTSLLTLTTSPIELTDGIEKLLNPLRKIGVPAHELAMM
MTIALRFIPTLMDETDKIMKAQMARGADFESGNLIQRAKNLIPLLVPLFISSFRRADELAMAMEARCYRGGEGRTRMKEL
SLSSRDFVAAAFTSILVILSIWSRMWT

Sequences:

>Translated_267_residues
MIKDITIGQYIPGDSFVHKLDPRVKIIISLIYIIDLFIVNNFKGYIFIVLFTLAAILISQIKFKYIYKGLKPILILVIIT
AVLNLFLTPGDTLLFKWKFITIYKEGLRLAIFMVLRLVFLIIGTSLLTLTTSPIELTDGIEKLLNPLRKIGVPAHELAMM
MTIALRFIPTLMDETDKIMKAQMARGADFESGNLIQRAKNLIPLLVPLFISSFRRADELAMAMEARCYRGGEGRTRMKEL
SLSSRDFVAAAFTSILVILSIWSRMWT
>Mature_267_residues
MIKDITIGQYIPGDSFVHKLDPRVKIIISLIYIIDLFIVNNFKGYIFIVLFTLAAILISQIKFKYIYKGLKPILILVIIT
AVLNLFLTPGDTLLFKWKFITIYKEGLRLAIFMVLRLVFLIIGTSLLTLTTSPIELTDGIEKLLNPLRKIGVPAHELAMM
MTIALRFIPTLMDETDKIMKAQMARGADFESGNLIQRAKNLIPLLVPLFISSFRRADELAMAMEARCYRGGEGRTRMKEL
SLSSRDFVAAAFTSILVILSIWSRMWT

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30339; Mature: 30339

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKDITIGQYIPGDSFVHKLDPRVKIIISLIYIIDLFIVNNFKGYIFIVLFTLAAILISQ
CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IKFKYIYKGLKPILILVIITAVLNLFLTPGDTLLFKWKFITIYKEGLRLAIFMVLRLVFL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
IIGTSLLTLTTSPIELTDGIEKLLNPLRKIGVPAHELAMMMTIALRFIPTLMDETDKIMK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMARGADFESGNLIQRAKNLIPLLVPLFISSFRRADELAMAMEARCYRGGEGRTRMKEL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SLSSRDFVAAAFTSILVILSIWSRMWT
CCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKDITIGQYIPGDSFVHKLDPRVKIIISLIYIIDLFIVNNFKGYIFIVLFTLAAILISQ
CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IKFKYIYKGLKPILILVIITAVLNLFLTPGDTLLFKWKFITIYKEGLRLAIFMVLRLVFL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
IIGTSLLTLTTSPIELTDGIEKLLNPLRKIGVPAHELAMMMTIALRFIPTLMDETDKIMK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMARGADFESGNLIQRAKNLIPLLVPLFISSFRRADELAMAMEARCYRGGEGRTRMKEL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SLSSRDFVAAAFTSILVILSIWSRMWT
CCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]