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The map label for this gene is yhaM [H]

Identifier: 226950832

GI number: 226950832

Start: 3886786

End: 3887682

Strand: Reverse

Name: yhaM [H]

Synonym: CLM_3844

Alternate gene names: 226950832

Gene position: 3887682-3886786 (Counterclockwise)

Preceding gene: 226950833

Following gene: 226950831

Centisome position: 93.56

GC content: 27.2

Gene sequence:

>897_bases
ATGAAAATTGCAGATATAACTAGTGAAAACAGTGGTGAAGTAGTAGAATTTAATGCTTTAGTTAATGATAAAAGGACAAA
TTATAAGAAAGATGGTAGTCCTTATCTACTACTAATATTACAAGACAACACAGGAACAATAGCTTTCCCCGTATGGGACA
AATATGAACAGTTAAACAATTTATTAGAGATAAATTCTATTATAGCTGTAAGGGGAGTAGCTGCTACATTTAATGGCAAT
ATGCAGATAAGAAATCCAGCTATAAATGTATTTAAAGAAAGTATAAATTATTCTGATTTTGTACCAGAATATGATATACC
TAAAAACTTAATAAATTATTTTAATGAAACTATAAATAGTTTAGAAGATAAATATAAAAAAATAGCTATAGCAGCTACTG
GAGCTATGGGATATGATAAGAAAAGATGGAATGAATTTATAACCTGTGTTGCTGCAGAAAAATTTCATGGTAACAAAAGA
GGAGGATTATTTCTTCATACCGTAGGAGTGATGAAAACTATAGAAAATATAATAGATGATTATATAACAAATCCATTTTA
TATGAGTGCACAGAATTGTATAAATAAAGATAGGTTAATGCTTAAGGCTATTGTTCATGACATAATGAAAATTAAAGAAT
ATGATTATGAGGGTATAATAAGAAGAAAACCTATAAAGATGGATCATTTAGTAATGGGAGCTTCTTATATAAATGAAATA
AACAGTGAAGTTGGAAAGATTTTAGATGAAGAGGAATTAGATGATATTTGTTATTCTATATTATCTCATCATGGAGAGTT
TGGTAATTTTGAGCCTAAAACCATAGAAGATGTATTATTAAATGCAGCAGATATAATTGATAGCCAAATAGTTAATGCTA
TAGAAAATAAAATATAA

Upstream 100 bases:

>100_bases
AAACGGAGGTCAAGGTGGTATAGCTGCAGCTAGTATAGCTTCACAAGTAATGAGTACAGCGTTGAGCAAATAATAAAATA
GGGGTGAAGGATAAAGTCAT

Downstream 100 bases:

>100_bases
TTTCACTAAATAAATCTTGTGTAATTCACAAGATTTATTTAATTTTAGAATTTTTTATTAGAACCATTAAATTTACTCGA
AAATTGCAAATAAAGGGCAA

Product: HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKIADITSENSGEVVEFNALVNDKRTNYKKDGSPYLLLILQDNTGTIAFPVWDKYEQLNNLLEINSIIAVRGVAATFNGN
MQIRNPAINVFKESINYSDFVPEYDIPKNLINYFNETINSLEDKYKKIAIAATGAMGYDKKRWNEFITCVAAEKFHGNKR
GGLFLHTVGVMKTIENIIDDYITNPFYMSAQNCINKDRLMLKAIVHDIMKIKEYDYEGIIRRKPIKMDHLVMGASYINEI
NSEVGKILDEEELDDICYSILSHHGEFGNFEPKTIEDVLLNAADIIDSQIVNAIENKI

Sequences:

>Translated_298_residues
MKIADITSENSGEVVEFNALVNDKRTNYKKDGSPYLLLILQDNTGTIAFPVWDKYEQLNNLLEINSIIAVRGVAATFNGN
MQIRNPAINVFKESINYSDFVPEYDIPKNLINYFNETINSLEDKYKKIAIAATGAMGYDKKRWNEFITCVAAEKFHGNKR
GGLFLHTVGVMKTIENIIDDYITNPFYMSAQNCINKDRLMLKAIVHDIMKIKEYDYEGIIRRKPIKMDHLVMGASYINEI
NSEVGKILDEEELDDICYSILSHHGEFGNFEPKTIEDVLLNAADIIDSQIVNAIENKI
>Mature_298_residues
MKIADITSENSGEVVEFNALVNDKRTNYKKDGSPYLLLILQDNTGTIAFPVWDKYEQLNNLLEINSIIAVRGVAATFNGN
MQIRNPAINVFKESINYSDFVPEYDIPKNLINYFNETINSLEDKYKKIAIAATGAMGYDKKRWNEFITCVAAEKFHGNKR
GGLFLHTVGVMKTIENIIDDYITNPFYMSAQNCINKDRLMLKAIVHDIMKIKEYDYEGIIRRKPIKMDHLVMGASYINEI
NSEVGKILDEEELDDICYSILSHHGEFGNFEPKTIEDVLLNAADIIDSQIVNAIENKI

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 33951; Mature: 33951

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIADITSENSGEVVEFNALVNDKRTNYKKDGSPYLLLILQDNTGTIAFPVWDKYEQLNN
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHH
LLEINSIIAVRGVAATFNGNMQIRNPAINVFKESINYSDFVPEYDIPKNLINYFNETINS
HHHHHHHHHHHEEEEEECCCEEEECHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHH
LEDKYKKIAIAATGAMGYDKKRWNEFITCVAAEKFHGNKRGGLFLHTVGVMKTIENIIDD
HHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHH
YITNPFYMSAQNCINKDRLMLKAIVHDIMKIKEYDYEGIIRRKPIKMDHLVMGASYINEI
HHCCCEEECHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
NSEVGKILDEEELDDICYSILSHHGEFGNFEPKTIEDVLLNAADIIDSQIVNAIENKI
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIADITSENSGEVVEFNALVNDKRTNYKKDGSPYLLLILQDNTGTIAFPVWDKYEQLNN
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHH
LLEINSIIAVRGVAATFNGNMQIRNPAINVFKESINYSDFVPEYDIPKNLINYFNETINS
HHHHHHHHHHHEEEEEECCCEEEECHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHH
LEDKYKKIAIAATGAMGYDKKRWNEFITCVAAEKFHGNKRGGLFLHTVGVMKTIENIIDD
HHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHH
YITNPFYMSAQNCINKDRLMLKAIVHDIMKIKEYDYEGIIRRKPIKMDHLVMGASYINEI
HHCCCEEECHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
NSEVGKILDEEELDDICYSILSHHGEFGNFEPKTIEDVLLNAADIIDSQIVNAIENKI
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA