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The map label for this gene is cph2 [H]

Identifier: 226950798

GI number: 226950798

Start: 3851587

End: 3852900

Strand: Reverse

Name: cph2 [H]

Synonym: CLM_3809

Alternate gene names: 226950798

Gene position: 3852900-3851587 (Counterclockwise)

Preceding gene: 226950800

Following gene: 226950797

Centisome position: 92.72

GC content: 24.51

Gene sequence:

>1314_bases
ATGATTTATACTAAACTAAGAAATTGCTTCTATGAATATTTATTCTATAAAAAAAATACTAAAATTAGGGTTATTATTTA
TGTAGTTTTAGTAGTTATATTAATAGAAGCTTTTTATTTAAAAATTTCCTCAGATATTCAAAAAGATATAGGTGAGAAAG
CTATACTTATTGCAACAGATTTTGCTAAAGATATTAATATAGATAAAAATGAATTTAATCGACTAATTTCTTTAGATTTG
AACCAACTTATAAAAGATGACACAAATATAAAATTTGAATACAGAGCAAGATATTTAATGAAATATTTGGATATAAAATA
TATTTATATTATGTCTGTTATACCAAATTCTCAAGTAAAATATAAAGTGGAGAAAGATGAAGAAAATTTATATAATAAAT
CAGAAGGAACTCCACTTAAAGTTATTTACTTATTAGATGCTGTAATAAATGATATTGAAAGAAATAAGGATATGACTGAT
GGAAAATATTTAGATAAAGATAGGTATACTATCATTAATGATGAATATATTAAGGTTTGTAAAAATAAAAAAGCTATATA
TTTTTTTAATAGAGATAAATGGGGCAATTATTTGACAGCATATACTCCAATCTATGATAATAATGGCAGATTTATGGGGG
TTATGGGAGTTGATATTTACCTTAGACACTATCTAAGACTTGCGAATAATAATATATATAGTATAGTTGGAATTAGTATA
ATCATTAGTATAATTGCAATAATAAAAATAATTAAGCTAAGCAAAGAAAATTATTCTGCTAATAATAAAATAAAAAAACT
ATCAATATGTTCCTTAACTTATGCATTAAATAGGGGAAATTTCATGGAAAAACTCAAAGATGAATTTGATGATAGTAAGA
AAAATAAGAGGCATATATCTATAGTATTCATAGATGTGGATTATTTTAAAGCATATAATGATAATTATGGACATATTGAA
GGAGATAAGGTTCTAATGAAAATAGGTAAAAGTATTATTAATGTAGCAAAGAAATATTCAGGAGTTGTGGGAAGATATGG
GGGGGACGAATTCATTGTACTTTTAAATGAGGTCAAGACTTCAGAATTAGAAGTCATAGCAATGGAAATTTCAAAAGAAA
TAAATAAATTAAAAATAAAAAGAGAGTATTCCCATATTAGCAAATATCAAACGGTTAGTATTGGTGTTGCTAGTATCATC
CCAAAGGAAGAAGAAAAAATAGAAGATTTAATAAACTATGCGGATAAGGCCTTGTACAAATCTAAAGAAAATGGGAGAAA
TTGTATATACGTATGGGGAGAAGATTTAAAATAA

Upstream 100 bases:

>100_bases
ATAAGAGTAAGAAAGTTTAAAGAATAAAATCAATTAGACAATATATTTATTAGCAAAAGACAGGAGTTTAATATAATGAA
AATAGGTAGAAGGCGATAGA

Downstream 100 bases:

>100_bases
ATTTATGGTATTCAAAGCGCAGTTGCATTATATAGAATGTGACTGTGTTTTTTATGTATATAAAAATATTCCTGATTAAC
ATATTGAAAATTTTGATTAT

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MIYTKLRNCFYEYLFYKKNTKIRVIIYVVLVVILIEAFYLKISSDIQKDIGEKAILIATDFAKDINIDKNEFNRLISLDL
NQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPNSQVKYKVEKDEENLYNKSEGTPLKVIYLLDAVINDIERNKDMTD
GKYLDKDRYTIINDEYIKVCKNKKAIYFFNRDKWGNYLTAYTPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGNFMEKLKDEFDDSKKNKRHISIVFIDVDYFKAYNDNYGHIE
GDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAMEISKEINKLKIKREYSHISKYQTVSIGVASII
PKEEEKIEDLINYADKALYKSKENGRNCIYVWGEDLK

Sequences:

>Translated_437_residues
MIYTKLRNCFYEYLFYKKNTKIRVIIYVVLVVILIEAFYLKISSDIQKDIGEKAILIATDFAKDINIDKNEFNRLISLDL
NQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPNSQVKYKVEKDEENLYNKSEGTPLKVIYLLDAVINDIERNKDMTD
GKYLDKDRYTIINDEYIKVCKNKKAIYFFNRDKWGNYLTAYTPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGNFMEKLKDEFDDSKKNKRHISIVFIDVDYFKAYNDNYGHIE
GDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAMEISKEINKLKIKREYSHISKYQTVSIGVASII
PKEEEKIEDLINYADKALYKSKENGRNCIYVWGEDLK
>Mature_437_residues
MIYTKLRNCFYEYLFYKKNTKIRVIIYVVLVVILIEAFYLKISSDIQKDIGEKAILIATDFAKDINIDKNEFNRLISLDL
NQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPNSQVKYKVEKDEENLYNKSEGTPLKVIYLLDAVINDIERNKDMTD
GKYLDKDRYTIINDEYIKVCKNKKAIYFFNRDKWGNYLTAYTPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGNFMEKLKDEFDDSKKNKRHISIVFIDVDYFKAYNDNYGHIE
GDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAMEISKEINKLKIKREYSHISKYQTVSIGVASII
PKEEEKIEDLINYADKALYKSKENGRNCIYVWGEDLK

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=29.940119760479, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=30.3370786516854, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=32.1212121212121, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=30.8900523560209, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=193, Percent_Identity=33.160621761658, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=150, Percent_Identity=32, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=255, Percent_Identity=27.0588235294118, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=128, Percent_Identity=37.5, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=32.2981366459627, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=37.4193548387097, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 51201; Mature: 51201

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYTKLRNCFYEYLFYKKNTKIRVIIYVVLVVILIEAFYLKISSDIQKDIGEKAILIATD
CCHHHHHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
FAKDINIDKNEFNRLISLDLNQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPNSQVK
CCCCCCCCHHHHHHHHHHCHHHHHCCCCCEEEHHHHHHHHHHHCEEEEEEEEECCCCCEE
YKVEKDEENLYNKSEGTPLKVIYLLDAVINDIERNKDMTDGKYLDKDRYTIINDEYIKVC
EEEECCHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECHHHHHHH
KNKKAIYFFNRDKWGNYLTAYTPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
CCCCEEEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEHHHHHH
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGNFMEKLKDEFDDSKKNKRHIS
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEE
IVFIDVDYFKAYNDNYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKT
EEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCC
SELEVIAMEISKEINKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYK
CHHHEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHC
SKENGRNCIYVWGEDLK
CCCCCCEEEEEECCCCC
>Mature Secondary Structure
MIYTKLRNCFYEYLFYKKNTKIRVIIYVVLVVILIEAFYLKISSDIQKDIGEKAILIATD
CCHHHHHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
FAKDINIDKNEFNRLISLDLNQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPNSQVK
CCCCCCCCHHHHHHHHHHCHHHHHCCCCCEEEHHHHHHHHHHHCEEEEEEEEECCCCCEE
YKVEKDEENLYNKSEGTPLKVIYLLDAVINDIERNKDMTDGKYLDKDRYTIINDEYIKVC
EEEECCHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECHHHHHHH
KNKKAIYFFNRDKWGNYLTAYTPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
CCCCEEEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEHHHHHH
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGNFMEKLKDEFDDSKKNKRHIS
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEE
IVFIDVDYFKAYNDNYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKT
EEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCC
SELEVIAMEISKEINKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYK
CHHHEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHC
SKENGRNCIYVWGEDLK
CCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]