| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is epiP [H]
Identifier: 226950761
GI number: 226950761
Start: 3795028
End: 3796470
Strand: Reverse
Name: epiP [H]
Synonym: CLM_3771
Alternate gene names: 226950761
Gene position: 3796470-3795028 (Counterclockwise)
Preceding gene: 226950762
Following gene: 226950759
Centisome position: 91.37
GC content: 28.14
Gene sequence:
>1443_bases ATGATAAAAAAACTAAATTTCAAAAAAATTTATTTATTATTATTTTTAATTTTTATGTTTAGTATTATATTTCAAAGTAG TAAAGTACAAGCTATAGAAACAAATGAAAATAAAGATATTAACATAGTTGTTTTATTTAATAATAATCGTATTGATACTA ATGTTAAAAATTTAATTGAAAATTCTGGTGGAAAGATAAAAAATATATTATCAGAGGTTGGATGCATGGAGGTTAAATGT AACAGTAATCTTATATCACAAATCAAATCTTATAATACTGTAAAATCGTTAGGACCAAATCATAATATTCAAATTCCAAA AGAAAAAACAATAAAATTTAAAGAACGTATAAATAGAGGATATAAGTCAACAGAAACTAATAAGGATGGAGATTTATATG ATTTATATCAATGGGATATTAAGAGAATGACAAATAACGGTAAAAGTTTTCAGTTGAATACTGGTAACCATAATGTAGTA ATAGCTGTTTTAGATTCAGGAATAGATAAAGACCATCCAGATTTAAAAAATAATCTATTAGGAGGAGAAAATTTTATCCC AAAGGATTTTAATAATGATAAAACAGAAATTGGTGATCCAAGAGATATAGAAGATAGATTAGGACATGGAACATGTATTT CAGGAAGTATTGCTGGTAATGGAAGAATTAAAGGCATAGCTCCTAATATTGGATTTAAAAGCTATCGCGTATTTGATTCA AGAGGACATACAAACGCTACTATAATGTCATCTGCTATAATAAAAGCAACTGATGATGGAGCAAATGTTATCAATTTAAG CATGGCAGGGTATGATTTAAAGGGTAAATGCTACTGGACTGATCCTGATACTGGTGTTAAACATGACTTAGGAGATGATA TGGCTGAATATGAGTTATATAAACGTGCAATTCAATATGCATTAAATCATAATGTTACAGTAGTTACTGCAGCAGGAAAT GATGGACTTGATTGTTGTAATACTAAAAGTTTAACAGAATTTCTTAATAATAGAGATAAAGAAGATGGCTTTAGCTATGA AGGGGTTACTTATGAAATACCAGGAAGTATTGATGGAGTTATAAATGTTTCAGCTACAGGAAAAAATGATAAAATTGCAA CGTATTCAAACTATGGTAAGAATTTTATTGATGTAGCAGCACCAGGTGGCGATCATTCTAAAACAGAATCTTTAGATATT AATGATATGTGTTTAAGCACAGCAATTGAAGGTCAATATAGGTTTGAAGTAGGTACATCAATAGCAGCTCCAAAGGTTTC AGCGATAGCAGGACTTCTTTTATGTAAAAATAAAAATCTTACACCAAAGGAAGTTGCAGAAAAAATTTATGAAACATGTG ATATATTAGATAATGATGAATCAAAACAATATTATGGATCAGGACTTGCTAATGCATATAATGCTCTAGAAAAAAATAAA TAA
Upstream 100 bases:
>100_bases TAATTTTCATTTTTTTATAAGAGCAATAAAAATATACAAAAATTTAAAAAAATGTTGTATTGTGGATGATATACAAATTA TTTTATAAGGAGATGTTATT
Downstream 100 bases:
>100_bases ATTAATTTATACATAAGACACACTAGATTTTAACATCTATAATTAAAATACATTGCTAAAACTAATATGGAATTTTTTTG AAATTCACTCATGAATTTTA
Product: nisin leader peptide-processing serine protease NisP
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 480; Mature: 480
Protein sequence:
>480_residues MIKKLNFKKIYLLLFLIFMFSIIFQSSKVQAIETNENKDINIVVLFNNNRIDTNVKNLIENSGGKIKNILSEVGCMEVKC NSNLISQIKSYNTVKSLGPNHNIQIPKEKTIKFKERINRGYKSTETNKDGDLYDLYQWDIKRMTNNGKSFQLNTGNHNVV IAVLDSGIDKDHPDLKNNLLGGENFIPKDFNNDKTEIGDPRDIEDRLGHGTCISGSIAGNGRIKGIAPNIGFKSYRVFDS RGHTNATIMSSAIIKATDDGANVINLSMAGYDLKGKCYWTDPDTGVKHDLGDDMAEYELYKRAIQYALNHNVTVVTAAGN DGLDCCNTKSLTEFLNNRDKEDGFSYEGVTYEIPGSIDGVINVSATGKNDKIATYSNYGKNFIDVAAPGGDHSKTESLDI NDMCLSTAIEGQYRFEVGTSIAAPKVSAIAGLLLCKNKNLTPKEVAEKIYETCDILDNDESKQYYGSGLANAYNALEKNK
Sequences:
>Translated_480_residues MIKKLNFKKIYLLLFLIFMFSIIFQSSKVQAIETNENKDINIVVLFNNNRIDTNVKNLIENSGGKIKNILSEVGCMEVKC NSNLISQIKSYNTVKSLGPNHNIQIPKEKTIKFKERINRGYKSTETNKDGDLYDLYQWDIKRMTNNGKSFQLNTGNHNVV IAVLDSGIDKDHPDLKNNLLGGENFIPKDFNNDKTEIGDPRDIEDRLGHGTCISGSIAGNGRIKGIAPNIGFKSYRVFDS RGHTNATIMSSAIIKATDDGANVINLSMAGYDLKGKCYWTDPDTGVKHDLGDDMAEYELYKRAIQYALNHNVTVVTAAGN DGLDCCNTKSLTEFLNNRDKEDGFSYEGVTYEIPGSIDGVINVSATGKNDKIATYSNYGKNFIDVAAPGGDHSKTESLDI NDMCLSTAIEGQYRFEVGTSIAAPKVSAIAGLLLCKNKNLTPKEVAEKIYETCDILDNDESKQYYGSGLANAYNALEKNK >Mature_480_residues MIKKLNFKKIYLLLFLIFMFSIIFQSSKVQAIETNENKDINIVVLFNNNRIDTNVKNLIENSGGKIKNILSEVGCMEVKC NSNLISQIKSYNTVKSLGPNHNIQIPKEKTIKFKERINRGYKSTETNKDGDLYDLYQWDIKRMTNNGKSFQLNTGNHNVV IAVLDSGIDKDHPDLKNNLLGGENFIPKDFNNDKTEIGDPRDIEDRLGHGTCISGSIAGNGRIKGIAPNIGFKSYRVFDS RGHTNATIMSSAIIKATDDGANVINLSMAGYDLKGKCYWTDPDTGVKHDLGDDMAEYELYKRAIQYALNHNVTVVTAAGN DGLDCCNTKSLTEFLNNRDKEDGFSYEGVTYEIPGSIDGVINVSATGKNDKIATYSNYGKNFIDVAAPGGDHSKTESLDI NDMCLSTAIEGQYRFEVGTSIAAPKVSAIAGLLLCKNKNLTPKEVAEKIYETCDILDNDESKQYYGSGLANAYNALEKNK
Specific function: Protease which cleaves the matured lantibiotic from the modified prepeptide (Probable) [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Homo sapiens, GI4506775, Length=286, Percent_Identity=25.8741258741259, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI45550681, Length=296, Percent_Identity=23.6486486486486, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR008357 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 53102; Mature: 53102
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS00136 SUBTILASE_ASP ; PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKKLNFKKIYLLLFLIFMFSIIFQSSKVQAIETNENKDINIVVLFNNNRIDTNVKNLIE CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHH NSGGKIKNILSEVGCMEVKCNSNLISQIKSYNTVKSLGPNHNIQIPKEKTIKFKERINRG CCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHCCC YKSTETNKDGDLYDLYQWDIKRMTNNGKSFQLNTGNHNVVIAVLDSGIDKDHPDLKNNLL CCCCCCCCCCCEEHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCCCCCHHHCCC GGENFIPKDFNNDKTEIGDPRDIEDRLGHGTCISGSIAGNGRIKGIAPNIGFKSYRVFDS CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECEECCCCEEEEECCCCCCCEEEEECC RGHTNATIMSSAIIKATDDGANVINLSMAGYDLKGKCYWTDPDTGVKHDLGDDMAEYELY CCCCCCEEEECEEEEECCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHH KRAIQYALNHNVTVVTAAGNDGLDCCNTKSLTEFLNNRDKEDGFSYEGVTYEIPGSIDGV HHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCE INVSATGKNDKIATYSNYGKNFIDVAAPGGDHSKTESLDINDMCLSTAIEGQYRFEVGTS EEEEECCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCC IAAPKVSAIAGLLLCKNKNLTPKEVAEKIYETCDILDNDESKQYYGSGLANAYNALEKNK CCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure MIKKLNFKKIYLLLFLIFMFSIIFQSSKVQAIETNENKDINIVVLFNNNRIDTNVKNLIE CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHH NSGGKIKNILSEVGCMEVKCNSNLISQIKSYNTVKSLGPNHNIQIPKEKTIKFKERINRG CCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHCCC YKSTETNKDGDLYDLYQWDIKRMTNNGKSFQLNTGNHNVVIAVLDSGIDKDHPDLKNNLL CCCCCCCCCCCEEHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCCCCCHHHCCC GGENFIPKDFNNDKTEIGDPRDIEDRLGHGTCISGSIAGNGRIKGIAPNIGFKSYRVFDS CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECEECCCCEEEEECCCCCCCEEEEECC RGHTNATIMSSAIIKATDDGANVINLSMAGYDLKGKCYWTDPDTGVKHDLGDDMAEYELY CCCCCCEEEECEEEEECCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHH KRAIQYALNHNVTVVTAAGNDGLDCCNTKSLTEFLNNRDKEDGFSYEGVTYEIPGSIDGV HHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCE INVSATGKNDKIATYSNYGKNFIDVAAPGGDHSKTESLDINDMCLSTAIEGQYRFEVGTS EEEEECCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCC IAAPKVSAIAGLLLCKNKNLTPKEVAEKIYETCDILDNDESKQYYGSGLANAYNALEKNK CCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1740156 [H]