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The map label for this gene is yibD [C]

Identifier: 226950113

GI number: 226950113

Start: 3063111

End: 3064226

Strand: Reverse

Name: yibD [C]

Synonym: CLM_3067

Alternate gene names: 226950113

Gene position: 3064226-3063111 (Counterclockwise)

Preceding gene: 226950114

Following gene: 226950112

Centisome position: 73.74

GC content: 24.64

Gene sequence:

>1116_bases
GTGGTAAGCGTAATAATTGCTGTATATAATGGAGAAAAGTACATTAAGGAAGCTGTAGAAAGTATATTGAATCAGACATA
TAAAGATATAGAATTAATAGTTGTTGATGATGGTTCTACAGATAGAACTAAAGAGATATTAACTAATTATCCTAATATAA
AATATGTATATCAAGATAACAGAGGAGAAGGTGCTGCTAGAAATTTAGGTACTAGTTTAGCAAAAGGGGATTATATAGCT
TTTTTAGATGGAGATGATCTATATAAAAAAGATAAAATAGAAAAGCAGATTAATATGTTAGAGCTGAATCCAGAAATAGA
TGTGGTTTATTGTGATTTAGAAGTAGTTGATGAAAAATTAAAATATATAAACATATTAAAAAGTGAAGGAGTATACGATA
AAAGAGAAGATTTGCTACCAATGATGCTATATAGACAAGTTGTTCAAGGTCCTATATGTATGATGATAAGAAAGAAATGT
TCTGATGCAGTAAAATGGAAAGAAAATTATACTTATATAGTAGATTATATATATACTATAAATTTAGCAAAGAAATTTAA
TTTTAAATATTTAGAAGAGCCCTTATATGTATATAGGAGGCATAATAATAATTTATCTAATTCTCATGAAAAAACTTTAG
TTGAAGAAAGAAGATTTTTAGAAAGTATAGGAATTGATGAAATAGGAAAAATAATTAATAATTCTAGTTTTGATAGGTAT
AATAGAAAAATATTATTAGCAAAAATTTTAATTAAAATGCTTAAATATAAAGAAGCTCAACACATACTTGAAGAAATAAA
AGATATTAAAAAAGACGAATATGTATTATTGAATTTGGGAAATTGTTTTTATAAACAAGGAAATATTAAAGAAGCTCAAA
AATGCTATGAAAGTAGTTTGCTAATTAATTCTACTATGGCAGAGGCATATAATAATTTAGGTTGTGTTATATCATATTTT
GATAAAAAAGCTGCTTTCGAAATGTTTAAAAAGGCTTTAGATACAAGGAAAGGTTATATGGATGCTCAAATTAACCTAGA
TAGGATTAGTAATAATAGTTCGGATTATAAGTTAACTGAAAAAGAATTAAGAAAAGTATTGACTTTTTATAATTAA

Upstream 100 bases:

>100_bases
ATATTTTGGAATGGAATTTCGCAGAAGAAAGAAGTAAAGATTTTATCTATTATTTAGTTTTAAAAGTAAAGAAAACTAAT
TAAATATTGGTGGTGATATA

Downstream 100 bases:

>100_bases
TTTTACTTAGTTAGGTGATGAATTTGTATAATGTATTAATTTTTGGTACGGGAACTGGTTGTAATTTTTTAATGAATGCT
TTAGACATAAATAAAATAAA

Product: family 2 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MVSVIIAVYNGEKYIKEAVESILNQTYKDIELIVVDDGSTDRTKEILTNYPNIKYVYQDNRGEGAARNLGTSLAKGDYIA
FLDGDDLYKKDKIEKQINMLELNPEIDVVYCDLEVVDEKLKYINILKSEGVYDKREDLLPMMLYRQVVQGPICMMIRKKC
SDAVKWKENYTYIVDYIYTINLAKKFNFKYLEEPLYVYRRHNNNLSNSHEKTLVEERRFLESIGIDEIGKIINNSSFDRY
NRKILLAKILIKMLKYKEAQHILEEIKDIKKDEYVLLNLGNCFYKQGNIKEAQKCYESSLLINSTMAEAYNNLGCVISYF
DKKAAFEMFKKALDTRKGYMDAQINLDRISNNSSDYKLTEKELRKVLTFYN

Sequences:

>Translated_371_residues
MVSVIIAVYNGEKYIKEAVESILNQTYKDIELIVVDDGSTDRTKEILTNYPNIKYVYQDNRGEGAARNLGTSLAKGDYIA
FLDGDDLYKKDKIEKQINMLELNPEIDVVYCDLEVVDEKLKYINILKSEGVYDKREDLLPMMLYRQVVQGPICMMIRKKC
SDAVKWKENYTYIVDYIYTINLAKKFNFKYLEEPLYVYRRHNNNLSNSHEKTLVEERRFLESIGIDEIGKIINNSSFDRY
NRKILLAKILIKMLKYKEAQHILEEIKDIKKDEYVLLNLGNCFYKQGNIKEAQKCYESSLLINSTMAEAYNNLGCVISYF
DKKAAFEMFKKALDTRKGYMDAQINLDRISNNSSDYKLTEKELRKVLTFYN
>Mature_371_residues
MVSVIIAVYNGEKYIKEAVESILNQTYKDIELIVVDDGSTDRTKEILTNYPNIKYVYQDNRGEGAARNLGTSLAKGDYIA
FLDGDDLYKKDKIEKQINMLELNPEIDVVYCDLEVVDEKLKYINILKSEGVYDKREDLLPMMLYRQVVQGPICMMIRKKC
SDAVKWKENYTYIVDYIYTINLAKKFNFKYLEEPLYVYRRHNNNLSNSHEKTLVEERRFLESIGIDEIGKIINNSSFDRY
NRKILLAKILIKMLKYKEAQHILEEIKDIKKDEYVLLNLGNCFYKQGNIKEAQKCYESSLLINSTMAEAYNNLGCVISYF
DKKAAFEMFKKALDTRKGYMDAQINLDRISNNSSDYKLTEKELRKVLTFYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=226, Percent_Identity=30.5309734513274, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787259, Length=113, Percent_Identity=33.6283185840708, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 43494; Mature: 43494

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVIIAVYNGEKYIKEAVESILNQTYKDIELIVVDDGSTDRTKEILTNYPNIKYVYQDN
CEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEECC
RGEGAARNLGTSLAKGDYIAFLDGDDLYKKDKIEKQINMLELNPEIDVVYCDLEVVDEKL
CCCCHHHHHCCHHCCCCEEEEECCCCHHHHHHHHHHHCEEEECCCEEEEEECHHHHHHHH
KYINILKSEGVYDKREDLLPMMLYRQVVQGPICMMIRKKCSDAVKWKENYTYIVDYIYTI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
NLAKKFNFKYLEEPLYVYRRHNNNLSNSHEKTLVEERRFLESIGIDEIGKIINNSSFDRY
EHHHHCCHHHHHCHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHH
NRKILLAKILIKMLKYKEAQHILEEIKDIKKDEYVLLNLGNCFYKQGNIKEAQKCYESSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCHHHHHHHHHHHH
LINSTMAEAYNNLGCVISYFDKKAAFEMFKKALDTRKGYMDAQINLDRISNNSSDYKLTE
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEECEEEHHHCCCCCCCCEECH
KELRKVLTFYN
HHHHHHHHCCC
>Mature Secondary Structure
MVSVIIAVYNGEKYIKEAVESILNQTYKDIELIVVDDGSTDRTKEILTNYPNIKYVYQDN
CEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEECC
RGEGAARNLGTSLAKGDYIAFLDGDDLYKKDKIEKQINMLELNPEIDVVYCDLEVVDEKL
CCCCHHHHHCCHHCCCCEEEEECCCCHHHHHHHHHHHCEEEECCCEEEEEECHHHHHHHH
KYINILKSEGVYDKREDLLPMMLYRQVVQGPICMMIRKKCSDAVKWKENYTYIVDYIYTI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
NLAKKFNFKYLEEPLYVYRRHNNNLSNSHEKTLVEERRFLESIGIDEIGKIINNSSFDRY
EHHHHCCHHHHHCHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHH
NRKILLAKILIKMLKYKEAQHILEEIKDIKKDEYVLLNLGNCFYKQGNIKEAQKCYESSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCHHHHHHHHHHHH
LINSTMAEAYNNLGCVISYFDKKAAFEMFKKALDTRKGYMDAQINLDRISNNSSDYKLTE
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEECEEEHHHCCCCCCCCEECH
KELRKVLTFYN
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA